BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64510.1 Length=1618 Score E Sequences producing significant alignments: (Bits) Value Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994 1947 0.0 > Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994 Length=1278 Score = 1947 bits (1054), Expect = 0.0 Identities = 1203/1277 (94%), Gaps = 2/1277 (0%) Strand=Plus/Plus Query 188 GATGGGTCACAGAGTATTGGTTTATGTTGGAGCTCTGTTTCTGATTTTATTCACGATTTT 247 |||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| Sbjct 3 GATGGGTCACAGGGTATTGGTTTGTGTCGGAGCTCTGTTTCTAATTTTATTCACGATTTT 62 Query 248 TCCATCTTCTAGTGCTTTAATTTCGTCTCCTGATGCTAATCCTCCTTACCCTAAAGCTAT 307 |||||| ||||| || || |||||||||||||| |||||||||||||||||||||||||| Sbjct 63 TCCATCGTCTAGAGCCTTGATTTCGTCTCCTGAGGCTAATCCTCCTTACCCTAAAGCTAT 122 Query 308 CTCCGATTTGAAGGAATCAATTGTGAAGGGACTTGGATTCCAATCCGAGGAAGTCAAGGT 367 ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 123 CTCGGATTTGAAGGAAGCAATTGTGAAGGGACTTGGATTCCAATCTGAGGAAGTCAAGGT 182 Query 368 TTCTGGGTTTGATATAAGGGATGCATTGGTAGGACATTCTGTTTCATACGAATTTGATTT 427 |||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 183 TTCTGGTTTTGATGTAAGGGATGCATTGGTAGGACATTCTGTTTCTTATGAATTTGATTT 242 Query 428 AGAAATCGACAATAAAGTTCTCCCATTTAAGCTTCTTGAAGATGTGAACCGATGGGAATA 487 |||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct 243 AGAAATCGACAACAAAGTGCTTCCATTTAAGCTTCTTGAGGATGTGAACCGATGGGAATA 302 Query 488 CGTTGATCTCCCAATTTTCCAAGTAGAACAACCCTCTGAG-AATGGTTTGGTTCCTATGA 546 ||| |||||||| |||||||||||||||||||| | || |||||||||||||| |||| Sbjct 303 CGTAGATCTCCCTATTTTCCAAGTAGAACAACCAAAT-AGAAATGGTTTGGTTCCCATGA 361 Query 547 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTTCTG 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 362 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTGCTG 421 Query 607 GTCCTATGGAACTTTGGATCCAAGATGCTAATAATATGCGCCTTTCTTTACCATATGATG 666 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 422 GTCCTATGGAACTTTGGATCCAAGATGCTAACAATATGCGCCTTTCTTTACCATATGATG 481 Query 667 TGGATGCTGGTGTTTTGAAGAAAGTGATATTAGCAGATGGTGCTGTTGTAACAGTTAAAG 726 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 482 TGGATGCTGGTGTTTTGAAGAAAGTGATATTATCAGATGGTTCTGTTGTAACAGTTAAAG 541 Query 727 GAGCTAGATCTGTTAGCTTGCGTCATCCCATTGATTTGCCACTTCCATTGAATCAGAGTT 786 |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || | Sbjct 542 GAGCTAGATCAGTTAGTTTGCGTCATCCCATTGATTTGCCACTTCCATTGAACCAAAGCT 601 Query 787 CCAATGAGTTTGCTTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCGACTG 846 ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 602 CCAATGAATTTGCCTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCAACTG 661 Query 847 ATCAAGAAAGTCCAGTTCTTTCGCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 906 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 662 ATCAAGAAAGTCCACTTCTTTCTCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 721 Query 907 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAATTAT 966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 722 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAACTAT 781 Query 967 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACCATTGGTGCCAACGCTATGACTACTG 1026 |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| | Sbjct 782 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACGATTGGCGCCAGCGCTATGACTACCG 841 Query 1027 TTCTTACCCCAAGAGAGTTTACAACCATGTGGCCAATCACTTCAATCAATGGCTCAAATG 1086 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct 842 TTCTTACCCCAAGAGAGTTTACAACAATGTGGCCAATTACTTCAATCAATGGCTCAAATG 901 Query 1087 CTAACTTACTTGGCTTTGAGAAACTATTGACCTCTGTTTTGGGTCCGAAAGCTCAGGAGA 1146 |||||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||||| | Sbjct 902 CTAACTTAATCGGCTTTGAGAAGCTACTGACCTCTGTTTTGGGTCCCAAAGCTCAGGAAA 961 Query 1147 AAGGTTCCTTTAAGGTGTTAAAAGCGAAAGTCGCTGCTCAAACCTTTATGAAGATTGGTT 1206 ||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||| Sbjct 962 AAGGTTCCTTTAAGGTGTTGAAAGCGAATGTCGCGGCTCAAACGTTTATGAAGATTGGTT 1021 Query 1207 TTGGCATAGAAAAGAAGCTCAAGGAAGCAGATGTTGAAGGTTTAAGCTTTCCAGAGTGGC 1266 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1022 TTGGTGTAGAAAAGAAGCTCAAGGAAGCAGATCTTGAAGGTTTAAGCTTTCCAGAGTGGC 1081 Query 1267 GAACAAAGCCTGAGACAATGAGAATGCATTTTGAGGTTCTTGCTAAAGTTGATGGTGAGA 1326 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1082 GAACAAAGCCTGAGACAATGAGAATGCATTTCGAGGTTCTTGCTAAAGTTGATGGAGAGA 1141 Query 1327 ATGTTATCCCGGAGAACGTAATGCGAGTTGATCCAATCCCACTGGAGGACACGATAGCGC 1386 | |||||||| |||||| |||||||||||||||| || ||| ||||||||||||| |||| Sbjct 1142 AAGTTATCCCAGAGAACATAATGCGAGTTGATCCGATACCATTGGAGGACACGATTGCGC 1201 Query 1387 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTGAGTCTCCTCCAA 1446 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1202 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTCAGTCTCCTCCAA 1261 Query 1447 GCCCTTTTACCTTGTAA 1463 ||||||| || |||||| Sbjct 1262 GCCCTTTCACTTTGTAA 1278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60639670040 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5