BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64510.1

Length=1618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994                   1947    0.0  


> Ahg918243 jgi|Araly1|918243|Al_scaffold_0008_2994
Length=1278

 Score = 1947 bits (1054),  Expect = 0.0
 Identities = 1203/1277 (94%), Gaps = 2/1277 (0%)
 Strand=Plus/Plus

Query  188   GATGGGTCACAGAGTATTGGTTTATGTTGGAGCTCTGTTTCTGATTTTATTCACGATTTT  247
             |||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct  3     GATGGGTCACAGGGTATTGGTTTGTGTCGGAGCTCTGTTTCTAATTTTATTCACGATTTT  62

Query  248   TCCATCTTCTAGTGCTTTAATTTCGTCTCCTGATGCTAATCCTCCTTACCCTAAAGCTAT  307
             |||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct  63    TCCATCGTCTAGAGCCTTGATTTCGTCTCCTGAGGCTAATCCTCCTTACCCTAAAGCTAT  122

Query  308   CTCCGATTTGAAGGAATCAATTGTGAAGGGACTTGGATTCCAATCCGAGGAAGTCAAGGT  367
             ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct  123   CTCGGATTTGAAGGAAGCAATTGTGAAGGGACTTGGATTCCAATCTGAGGAAGTCAAGGT  182

Query  368   TTCTGGGTTTGATATAAGGGATGCATTGGTAGGACATTCTGTTTCATACGAATTTGATTT  427
             |||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  183   TTCTGGTTTTGATGTAAGGGATGCATTGGTAGGACATTCTGTTTCTTATGAATTTGATTT  242

Query  428   AGAAATCGACAATAAAGTTCTCCCATTTAAGCTTCTTGAAGATGTGAACCGATGGGAATA  487
             |||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct  243   AGAAATCGACAACAAAGTGCTTCCATTTAAGCTTCTTGAGGATGTGAACCGATGGGAATA  302

Query  488   CGTTGATCTCCCAATTTTCCAAGTAGAACAACCCTCTGAG-AATGGTTTGGTTCCTATGA  546
             ||| |||||||| ||||||||||||||||||||   | || |||||||||||||| ||||
Sbjct  303   CGTAGATCTCCCTATTTTCCAAGTAGAACAACCAAAT-AGAAATGGTTTGGTTCCCATGA  361

Query  547   GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTTCTG  606
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  362   GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTGCTG  421

Query  607   GTCCTATGGAACTTTGGATCCAAGATGCTAATAATATGCGCCTTTCTTTACCATATGATG  666
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  422   GTCCTATGGAACTTTGGATCCAAGATGCTAACAATATGCGCCTTTCTTTACCATATGATG  481

Query  667   TGGATGCTGGTGTTTTGAAGAAAGTGATATTAGCAGATGGTGCTGTTGTAACAGTTAAAG  726
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  482   TGGATGCTGGTGTTTTGAAGAAAGTGATATTATCAGATGGTTCTGTTGTAACAGTTAAAG  541

Query  727   GAGCTAGATCTGTTAGCTTGCGTCATCCCATTGATTTGCCACTTCCATTGAATCAGAGTT  786
             |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct  542   GAGCTAGATCAGTTAGTTTGCGTCATCCCATTGATTTGCCACTTCCATTGAACCAAAGCT  601

Query  787   CCAATGAGTTTGCTTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCGACTG  846
             ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  602   CCAATGAATTTGCCTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCAACTG  661

Query  847   ATCAAGAAAGTCCAGTTCTTTCGCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT  906
             |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  662   ATCAAGAAAGTCCACTTCTTTCTCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT  721

Query  907   CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAATTAT  966
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  722   CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAACTAT  781

Query  967   CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACCATTGGTGCCAACGCTATGACTACTG  1026
             |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct  782   CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACGATTGGCGCCAGCGCTATGACTACCG  841

Query  1027  TTCTTACCCCAAGAGAGTTTACAACCATGTGGCCAATCACTTCAATCAATGGCTCAAATG  1086
             ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  842   TTCTTACCCCAAGAGAGTTTACAACAATGTGGCCAATTACTTCAATCAATGGCTCAAATG  901

Query  1087  CTAACTTACTTGGCTTTGAGAAACTATTGACCTCTGTTTTGGGTCCGAAAGCTCAGGAGA  1146
             |||||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct  902   CTAACTTAATCGGCTTTGAGAAGCTACTGACCTCTGTTTTGGGTCCCAAAGCTCAGGAAA  961

Query  1147  AAGGTTCCTTTAAGGTGTTAAAAGCGAAAGTCGCTGCTCAAACCTTTATGAAGATTGGTT  1206
             ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct  962   AAGGTTCCTTTAAGGTGTTGAAAGCGAATGTCGCGGCTCAAACGTTTATGAAGATTGGTT  1021

Query  1207  TTGGCATAGAAAAGAAGCTCAAGGAAGCAGATGTTGAAGGTTTAAGCTTTCCAGAGTGGC  1266
             ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1022  TTGGTGTAGAAAAGAAGCTCAAGGAAGCAGATCTTGAAGGTTTAAGCTTTCCAGAGTGGC  1081

Query  1267  GAACAAAGCCTGAGACAATGAGAATGCATTTTGAGGTTCTTGCTAAAGTTGATGGTGAGA  1326
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  1082  GAACAAAGCCTGAGACAATGAGAATGCATTTCGAGGTTCTTGCTAAAGTTGATGGAGAGA  1141

Query  1327  ATGTTATCCCGGAGAACGTAATGCGAGTTGATCCAATCCCACTGGAGGACACGATAGCGC  1386
             | |||||||| |||||| |||||||||||||||| || ||| ||||||||||||| ||||
Sbjct  1142  AAGTTATCCCAGAGAACATAATGCGAGTTGATCCGATACCATTGGAGGACACGATTGCGC  1201

Query  1387  AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTGAGTCTCCTCCAA  1446
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1202  AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTCAGTCTCCTCCAA  1261

Query  1447  GCCCTTTTACCTTGTAA  1463
             ||||||| || ||||||
Sbjct  1262  GCCCTTTCACTTTGTAA  1278



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60639670040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5