BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64570.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496670 jgi|Araly1|496670|fgenesh2_kg.8__2486__AT5G64570.1 3899 0.0
Ahg325518 jgi|Araly1|325518|fgenesh1_pm.C_scaffold_6000738 1563 0.0
> Ahg496670 jgi|Araly1|496670|fgenesh2_kg.8__2486__AT5G64570.1
Length=2485
Score = 3899 bits (2111), Expect = 0.0
Identities = 2368/2492 (95%), Gaps = 17/2492 (1%)
Strand=Plus/Plus
Query 1 ATCCCAAGAAATCGAAACACAAAGCAATGGGCTCTTCTTCTCCATTAACAAGGAGAAACA 60
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATCCCAAGAAATCGAAACACAACGCAATGGGCTCTTCTTCTCCACTAACAAGGAGAAACA 60
Query 61 GAGCACCACCATCCTCTGTTTCCTCTGTTTATCTAATCTTTCTCTGTTTCTTCCTCTACT 120
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 GAGCACCACCATCCTCTGTTTCCTCTGTTTTTCTTATCTTTCTCTGTTTCTTCCTCTACT 120
Query 121 TTTTAAATTTCTCAAACGCTCAATCATCGCCGGTTTTCGCCTGCGACGTAGCTGCAAACC 180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTAGATTTATCAAACGCTCAATCATCGCCGGTTTTCGCCTGCGACGTAGCTGCAAACC 180
Query 181 CTTCTCTCGCCGCCTATGGTTTCTGCAACACCGTTTTGAAGATCGAATACCGAGTCGCTG 240
|||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCTCTCGCTGCATATGGATTCTGCAACACCGTTTTGAAGATCGAATACCGAGTCGCTG 240
Query 241 ATCTGGTCGCGAGGCTCACGTTGCAAGAAAAGATCGGGTTTTTAGTGAGTAAAGCTAACG 300
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 ATCTGGTCGCGAGGCTTACGTTGCAAGAAAAGATTGGGTTTTTAGTGAGTAAAGCTAACG 300
Query 301 GCGTGACTCGTCTTGGGATTCCAACGTATGAATGGTGGTCTGAAGCACTTCACGGCGTTT 360
|||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 301 GCGTGACTCGGCTTGGGATTCCGACGTATGAATGGTGGTCGGAAGCACTCCACGGCGTTT 360
Query 361 CTTACATCGGACCCGGCACGCATTTTTCTAGCCAAGTTCCCGGAGCTACGAGTTTCCCGC 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 CTTACATCGGACCCGGCACGCATTTTTCCAGCCAAGTTCCCGGAGCTACGAGTTTCCCGC 420
Query 421 AGGTTATACTCACCGCCGCTTCTTTCAACGTATCTCTGTTTCAAGCCATTGGCAAGGTCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGTTATACTCACCGCCGCTTCTTTCAACGTATCTCTGTTTCAAGCCATTGGCAAGGTCG 480
Query 481 TCTCAACGGAAGCGAGGGCAATGTACAACGTGGGATTAGCCGGACTAACGTATTGGTCAC 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCGACGGAAGCGAGGGCAATGTACAACGTGGGATTAGCCGGACTAACGTATTGGTCAC 540
Query 541 CGAACGTGAACATATTCCGAGATCCAAGATGGGGAAGAGGGCAAGAGACTCCAGGAGAAG 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 CGAACGTGAACATATTCCGAGATCCAAGATGGGGAAGAGGACAAGAGACTCCAGGAGAAG 600
Query 601 ATCCATTGCTCGCTAGTAAGTATGCTTCAGGGTACGTTAAGGGTCTTCAAGAGACTGACG 660
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 ATCCATTGCTCGCTAGCAAGTATGCTTCAGGGTACGTTAAGGGTCTCCAAGAGACTGACG 660
Query 661 GTGGCGATTCTAACCGTCTCAAAGTCGCCGCCTGCTGCAAACACTATACCGCTTACGATG 720
||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||| |
Sbjct 661 CTGGCGATTCTAACCGCCTAAAAGTCGCCGCTTGCTGCAAACACTACACCGCTTACGACG 720
Query 721 TCGATAATTGGAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGGTGACTCAACAAGATA 780
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGATAATTGGAAAGGAGTAGAACGTTACAGTTTCAACGCCGTGGTGACTCAACAAGATA 780
Query 781 TGGATGATACGTATCAACCACCGTTCAAGAGTTGTGTGGTTGATGGGAATGTGGCGAGTG 840
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 781 TGGATGATACGTATCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGAATGTAGCGAGTG 840
Query 841 TTATGTGTTCTTACAATCAAGTTAACGGCAAACCGACATGCGCTGATCCAGATCTGCTCT 900
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 TTATGTGTTCTTACAATCAAGTTAACGGCAAACCGACATGCGCTGATCCGGATCTGCTCT 900
Query 901 CTGGTGTTATCCGCGGTGAATGGAAATTAAATGGGTACATTGTTTCAGATTGTGATTCAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTGGTGTTATCCGCGGTGAATGGAAATTAAATGGGTACATTGTTTCAGATTGTGATTCAG 960
Query 961 TAGATGTCTTGTATAAGAACCAACACTATACAAAGACTCCAGCTGAAGCTGCAGCCATAT 1020
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 961 TAGATGTGTTGTATAAGAACCAACACTATACCAAGACTCCAGCAGAAGCTGCAGCCATAT 1020
Query 1021 CTATATTGGCAGGTTTGGATTTAAACTGTGGTTCATTCTTGGGTCAACATACAGAGGAAG 1080
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1021 CTATATTGGCAGGTTTGGATTTAAACTGCGGTTCGTTCTTGGGTCAACATACAGAGGAAG 1080
Query 1081 CAGTTAAGTCGGGTTTGGTAAACGAGGCAGCTATCGATAAAGCGATTTCGAACAACTTTT 1140
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGGTTAAGTCGGGTTTGGTAAACGAGGCAGCTATCGATAAAGCGATTTCGAACAACTTTT 1140
Query 1141 TGACCCTTATGCGTTTAGGATTCTTTGATGGAAACCCAAAGAACCAAATCTATGGCGGGT 1200
||||||||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||
Sbjct 1141 TGACCCTTATGCGTTTAGGATTCTTCGATGGTAATCCAAAGAACCAGATCTATGGTGGGT 1200
Query 1201 TAGGTCCTACCGACGTTTGCACGTCTGCGAATCAAGAGCTAGCAGCAGATGCAGCAAGAC 1260
| |||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||
Sbjct 1201 TGGGTCCTACAGACGTTTGCACGTCTGCGAATCAAGAACTAGCGGCAGACGCGGCAAGAC 1260
Query 1261 AAGGCATTGTTCTACTCAAGAATACTGGATGCTTACCGCTTTCTCCTAAATCGATCAAAA 1320
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1261 AAGGCATTGTTCTACTCAAGAATACTGGATGCTTACCGCTATCTCCTAAATCGATCAAAA 1320
Query 1321 CACTAGCCGTGATTGGACCAAACGCGAATGTCACCAAAACAATGATTGGAAACTACGAAG 1380
||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct 1321 CACTAGCCGTGATTGGACCGAACGCGAATGTCACCAAGACAATGATCGGGAACTACGAAG 1380
Query 1381 GCACGCCGTGTAAATACACAACACCACTACAAGGACTAGCCGGGACGGTATCTACAACAT 1440
| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1381 GTACGCCGTGTAAATACACAACACCACTACAAGGATTAGCTGGGACGGTATCAACAACAT 1440
Query 1441 ATCTACCAGGCTGCTCCAATGTAGCTTGTGCTGTAGCGGATGTAGCCGGCGCCACGAAAC 1500
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||
Sbjct 1441 ATCTACCAGGCTGCTCCAATGTAGCTTGTTCGGTAGCGGATGTAGCCGGTGCCACAAAAC 1500
Query 1501 TAGCAGCCACTGCAGATGTGTCTGTGCTTG-TGATCGGTGCCGATCAATCAATCGAGGCA 1559
|||| || || ||||||||| | |||| || |||||||||||||||||||||||||||||
Sbjct 1501 TAGCCGCAACAGCAGATGTGACAGTGC-TGTTGATCGGTGCCGATCAATCAATCGAGGCA 1559
Query 1560 GAGAGCCGAGACAGAGTCGACCTGCATCTTCCTGGACAGCAACAAGAGCTGGTGATCCAA 1619
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1560 GAGAGCCGAGACAGAGTCGACCTGAATCTTCCCGGACAGCAACAAGAGCTAGTGATCCAA 1619
Query 1620 GTGGCTAAAGCAGCAAAAGGACCGGTCTTGCTCGTCATTATGTCCGGTGGAGGTTTCGAT 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GTGGCTAAAGCAGCAAAAGGACCGGTCTTGCTCGTCATTATGTCCGGTGGAGGTTTCGAC 1679
Query 1680 ATTACATTCGCTAAGAATGACCCAAAGATCGCCGGAATTTTGTGGGTTGGTTATCCCGGA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATTACATTCGCTAAGAATGACCCAAAGATCGCCGGAATTTTGTGGGTTGGTTATCCCGGA 1739
Query 1740 GAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAATCCAAGTGGGAA- 1798
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1740 GAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTATAGTCCAAGTGG-AAG 1798
Query 1799 ATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCCGATGACAATAATGAA 1858
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1799 ATTACCGATGACTTGGTATCCACAGTCGTATGTAGAGAAAGTTCCGATGACAATTATGAA 1858
Query 1859 CATGAGACCCGATAAAGCAAGCGGGTATCCGGGTCGGACTTACCGATTCTACACCGGAGA 1918
|||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1859 CATGAGACCCAATAAATCAAACGGGTATCCGGGTCGGACTTACAGATTCTACACCGGAGA 1918
Query 1919 AACAGTATACGCATTCGGAGATGGACTCAGCTACACCAAATTCAGTCACA-CTTTAGTCA 1977
|||||| ||||| ||||||||||||||||||||||||| ||||||||| | ||| |||||
Sbjct 1919 AACAGTTTACGCCTTCGGAGATGGACTCAGCTACACCACATTCAGTCATAGCTT-AGTCA 1977
Query 1978 AAGCTCCAAGTCTCGTTTCTCTCGGTCTCGAAGAGAATCACGTTTGCCGATCATCGGAAT 2037
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1978 AAGCTCCAAGTCTCGTTTCTCTCAGTCTTGAAGAGAATCACGTTTGCCGATCATCGGAAT 2037
Query 2038 GTCAATCGCTAGACGCGATCGGACCGCACTGCGAAAACGCTGTCTCCGGCGGTGGATCGG 2097
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 2038 GTCAATCGCTGGACGCAATCGGACCGCACTGCGAAAACGCTGTCTCGGGCGGAGGATCTG 2097
Query 2098 CGTTTGAAGTTCATATCAAGGTACGAAACGGAGGAGATAGAGAAGGGATTCACACGGTGT 2157
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CGTTTGAGGTTCAGATTAAGGTACGAAACGGAGGAGATAGAGAAGGGATTCACACGGTGT 2157
Query 2158 TTCTATTCACGACGCCGCCGGCGATTCACGGATCGCCGAGGAAGCATTTGGTAGGATTCG 2217
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 2158 TTCTATTCACGACGCCGCCGGCGATTCACGGATCGCCGAGGAAGCATTTGTTAGGATTTG 2217
Query 2218 AGAAGATTCGATTGGGGAAGAGGGAAGAAGCGGTGGTTAGGTTTAAGGTAGAGATATGTA 2277
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |
Sbjct 2218 AGAAGATTCGATTGGGGAAGATGGAAGAAGCGGTGGTTAGGTTTAAGGTAGAGGTGTGCA 2277
Query 2278 AAGATCTGAGTGTGGTTGATGAGATTGGGAAGAGGAAGATTGGTTTGGGAAAGCATCTTC 2337
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AAGATCTGAGTGTTGTTGATGAGATTGGGAAGAGGAAGATTGGTTTGGGAAAGCATCTTC 2337
Query 2338 TTCATGTCGGAGATTTAAAACATTCCTTAAGCATTAGAATCTGATTCTA-TATTTTTATT 2396
|||||||||| ||||| |||||||||||||||||||| ||||||||||| | ||||| ||
Sbjct 2338 TTCATGTCGGCGATTTGAAACATTCCTTAAGCATTAGGATCTGATTCTAATTTTTTTTTT 2397
Query 2397 -TG---AG--GAAGaaaaaaaGAATATTAATATGCTTAAGCTTTTGCAAGTTGGAAAAGA 2450
| | || |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2398 CTTTTTATTTGA-GAAAAAAAGAATTTTAATATGCTTAAGCTTTTGCAAGTTGGAAAAAA 2456
Query 2451 AAAGTAATaaaaaaaaGAAATTGTGAATCTCT 2482
|||| ||||||||| | || ||||||||||||
Sbjct 2457 AAAG-AATAAAAAACA-AA-TTGTGAATCTCT 2485
> Ahg325518 jgi|Araly1|325518|fgenesh1_pm.C_scaffold_6000738
Length=2343
Score = 1563 bits (846), Expect = 0.0
Identities = 1861/2343 (79%), Gaps = 102/2343 (4%)
Strand=Plus/Plus
Query 83 CTCTGTTTATCTAATCTT-T-CTCTGTTTCTTCCTCTACTTTTTAAATTTCTCAAACGCT 140
||||| || |||| |||| | ||||||||| |||||| | | | | || ||||||
Sbjct 42 CTCTG-TT-TCTACTCTTCTCCTCTGTTTCCTCCTCTGCATCTCCGAGCAATCGAACGCT 99
Query 141 CAATCATCGCCGGTTTTCGCCTGCGACGT-AGCTGCAAACCCTTCTCTCGCC-GCCTATG 198
|| || || || || |||||||| ||||| | | | |||||||||||| ||| | || |
Sbjct 100 CAGTCTTCTCCAGTCTTCGCCTGTGACGTCA-CCGGAAACCCTTCTCTTGCCGGGCT-TA 157
Query 199 GTTTCTGCAACACCGTTTTGAAGATCGAATACCGAGTCGCTGATCTGGTCGCG-AGGCTC 257
| |||||||| || | ||||| ||| ||| ||||||| | ||||| || | | || |
Sbjct 158 GATTCTGCAATACGGGGTTGAATATCAAATCCCGAGTCACCGATCTTGTTG-GAAGATTG 216
Query 258 ACGTTGCAAGA-AAAGATCGGGTTTTTAGTG-AGTAAAGCTAACGGCGTGA-CTCGTCTT 314
|||||| | || ||| ||||||||||| | | || || |||| |||||| | | || |||
Sbjct 217 ACGTTGGAGGAGAAA-ATCGGGTTTTT-GGGAAGCAACGCTATCGGCGTTAGC-CGCCTT 273
Query 315 GGGATTCCAACGTATGAATGGTGGTCTGAAGCACTTCACGGCGTTTCTTACATCGGACCC 374
|||||||| | || |||||||||| || |||||||| ||||| ||| || |||||
Sbjct 274 GGGATTCCGGCTTACAAATGGTGGTCGGAGGCACTTCATGGCGTCTCTAACGTCGGAGGT 333
Query 375 GGCACGCA-TTTTTCTAGCCAAGTTCCC-GGAGCTACGAGTTTCCCGCAGGTTATACTCA 432
|| | | | ||| || | |||| |||| || || || || ||||| || ||||||||||
Sbjct 334 GGTA-GTAGTTTCTCCGGGCAAG-TCCCTGGCGCCACTAGCTTCCCACAAGTTATACTCA 391
Query 433 CCGCCGCTTCTTTCAACGTATCTCTGTTTCAAGCCATTGGCAAGGTCGTCTCAACGGAAG 492
| || ||||||||||| || ||| |||| ||||||||||||||||| || || ||||| |
Sbjct 392 CGGCAGCTTCTTTCAATGTGTCTTTGTTCCAAGCCATTGGCAAGGTTGTATCGACGGAGG 451
Query 493 CGAGGGCAATGTACAACGTGGGATTAGCCGGACTAACGTATTGGTCACCGAACGTGAACA 552
|||||||||||||||| ||||||| |||||| |||||| |||||||||||| |||||||
Sbjct 452 CGAGGGCAATGTACAATGTGGGATCAGCCGGTTTAACGTTTTGGTCACCGAATGTGAACA 511
Query 553 TATTCCGAGATCCAAGATGGGGAAGAGGGCAAGAGACTCCAGGAGAAGATCCATTGCTCG 612
||||||| || || |||||||||||||| |||||||| || || || || ||| |||
Sbjct 512 TATTCCGGGACCCGAGATGGGGAAGAGGACAAGAGACCCCCGGCGAGGACCCAGAACTCT 571
Query 613 CTAGTAAGTATGCTTCAGG-GTACGTTAAG-GGTCTTCAAGAGACTGACGGTGGCGATTC 670
| || || || || || || ||| || |||||||| ||||||||||||||||||||
Sbjct 572 CAAGCAAATACGC-GGTGGCTTATGTT-AGAGGTCTTCAGGAGACTGACGGTGGCGATTC 629
Query 671 TAACCGTCTCAAAGTCGCCGCCTGCTGCAAACACTATACCGCTTACGATGTCGATAATTG 730
|||||| || ||||||||||| |||||||||||||| ||||| || ||||| || |||||
Sbjct 630 TAACCGCCTAAAAGTCGCCGCTTGCTGCAAACACTACACCGCATATGATGTTGACAATTG 689
Query 731 GAAAGGCGTAGAACGTTACAGTTTCAACGCCGTGGT-GACTCAACAAGATATGGATGATA 789
||||| ||| | |||| || ||||||||||||||| || |||||||||||||||||||
Sbjct 690 GAAAGACGTCCATCGTTTCACTTTCAACGCCGTGGTAAAC-CAACAAGATATGGATGATA 748
Query 790 CGTATCAACCACCGTTCAAGAGTTGTGTGGTTGATGGGAATGTGGCGAGTGTTATGTGTT 849
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 749 CGTATCAACCACCGTTCAAGAGCTGTGTGGTTGATGGGAATGTAGCGAGTGTTATGTGTT 808
Query 850 CTTACAATCAAGTTAACGGCAAACCGACATGCGCTGATCCAGATCTGCTCTCTGGTGTTA 909
||||||| ||||||||||| ||||||||||| |||||||| |||||||| || || || |
Sbjct 809 CTTACAACCAAGTTAACGGAAAACCGACATGTGCTGATCCTGATCTGCTTTCCGGCGTGA 868
Query 910 TCCGCGGTGAATGGAAATTAAATGGGTACATTGTTTCAGATTGTGATTCAGTAGATGTCT 969
||||||| ||||||| ||||| || ||||||||||| ||||||||||| |||||||| |
Sbjct 869 TCCGCGGACAATGGAAGTTAAACGGATACATTGTTTCGGATTGTGATTCGGTAGATGTGT 928
Query 970 TGTATA-AGAACCAACACTATACAAAGACTCCAGCTGAAGCTGCAGCCATATCTATATTG 1028
|||| | | ||| |||||||||| |||||||||| ||||||| |||| |||||||||
Sbjct 929 TGTACACAAAAC-AACACTATACCAAGACTCCAGAGGAAGCTGTGGCCAAATCTATATTA 987
Query 1029 GCAGGTTTGGATTTAAACTGTGGTTCATT-CTTGGGTCAACATACAGAGGAA-GCAGTTA 1086
|||||||||||||| || |||| | |||| | ||||||| | || | ||| || || |
Sbjct 988 GCAGGTTTGGATTTGAATTGTGAT-CATTTCACGGGTCAATACGCA-ATGAAAGCGGTCA 1045
Query 1087 AG-TCGGGTTTGGTAAACGAGGCAGCTATCGATAAAGCGATTTCGAACAACTTTTT-GAC 1144
|| | |||||||||||| || ||||||| || ||||||||||| ||||| ||| |||
Sbjct 1046 AGGT-GGGTTTGGTAAATGAAACAGCTATTGACAAAGCGATTTCAAACAA-TTTCGCGAC 1103
Query 1145 CCTTATGCGTTTAGGATTCTTTGATGGAAACCCAAAGAACCAA-A--TCTATGGCGGG-T 1200
|| ||||||||||| ||||| |||||| |||| ||||| || | |||| || || |
Sbjct 1104 TCTGATGCGTTTAGGGTTCTTCGATGGAGACCCTAAGAAGCAGCAGCTCTACGGTGGTCT 1163
Query 1201 TAGGTCCTACCGACGTTTGCAC-GTCTGCGAATCAAGAGCTAGC-AGCAGATGCAGCAAG 1258
| ||||||| ||||||||||| | || || ||||| || || || |||||| |||||
Sbjct 1164 T-GGTCCTAATGACGTTTGCACCG-CTAATAACCAAGAACTCGCTAG-AGATGCCGCAAG 1220
Query 1259 ACAAGGCATTGTTCTA-CTCAAGAA-TACTG--GA-T-GCTTACCGCTTTCTCCTAAATC 1312
||||||| |||| || || ||||| | ||| | | |||| ||||| || ||| |
Sbjct 1221 ACAAGGCGTTGT-CTTGCTTAAGAACT-CTGATGGCTCGCTT-CCGCTCTCACCTTCCGC 1277
Query 1313 GATCAAAACACTAGCCGTGATTGGACCAAACGCGAATGTCACCA-AAACAATGATTGGAA 1371
||||||||| |||||||||| ||||||||||| || | ||| | |||||||||| || |
Sbjct 1278 CATCAAAACATTAGCCGTGATCGGACCAAACGCCAACGCCAC-AGAAACAATGATCGGGA 1336
Query 1372 ACTACGAA-GGCACGCCGTGTAAATACACAACACCACTACAAGGACTAGCCGGGACGGTA 1430
||||| || || | || || || |||||||| || || || ||||| || | |||||
Sbjct 1337 ACTAC-AACGGTATACCATGCAAGTACACAACGCCGCTTCAGGGACTGGCAGAAACGGTG 1395
Query 1431 TC-TACAACATATCTACCAGGCTGCTCCAATGTAGCTTGTGCTGTAGCGGATGTAGCCGG 1489
|| | | || |||| | | || ||| ||| || || || || | | | ||| ||| |
Sbjct 1396 TCGT-CTACCTATC-AGCTGG--GCTGCAACGTCGCATGCGCAGAACCTGATTTAGGCT- 1450
Query 1490 C-GCCAC-GAAACTAGCAGCCACTGCAGATG-TGTCTGTGCTTGTGATCGGTGCCGATCA 1546
| ||| | | || || || |||| |||| ||| |||||| ||||| || || || ||
Sbjct 1451 CAGCCGCTGCT-CTGGCTGCTTCTGCGGATGCTGT-TGTGCTCGTGATGGGCGCAGACCA 1508
Query 1547 ATCAATCGAGGCAG-AGAGCCGAGACAGAGTCGACCTGCATCTTCCTGGACAGCAACAAG 1605
|||||| ||| ||| ||| || ||| || |||||||| |||| || ||| | |||||||
Sbjct 1509 ATCAATTGAG-CAGGAGAACCTTGACCGACTCGACCTGTATCTGCCCGGAAAACAACAAG 1567
Query 1606 AGCTGGTGA-TCCAAGTGGCTAAAGCAGCAAAAGGACCGGTCTTGCTCGTCATTATGTCC 1664
|||| |||| || | |||||||| | || ||||||||||| |||| || || ||||||
Sbjct 1568 AGCTTGTGACTC-AGGTGGCTAAGGTGGCGAAAGGACCGGTGGTGCTAGTTATAATGTCC 1626
Query 1665 GGTGGAG-GTTTCGATATTACATTCGCTAAGAATGACCCAAAGATCGCCGGAATTTTGTG 1723
||||||| |||| || ||||||||||| ||||| || ||||||| | || ||| ||||
Sbjct 1627 GGTGGAGCGTTT-GACATTACATTCGCCAAGAACGAAGAAAAGATCACAGGCATTATGTG 1685
Query 1724 GGTTGGTTATCCCGGAGAAGCCGGTGGTATCGCCATTGCTGATATCATCTTTGGCCGTTA 1783
||| || ||||| || |||||||| ||| ||||||||||||| ||||||| || ||| |
Sbjct 1686 GGTCGGATATCCTGGTGAAGCCGGCGGTCTCGCCATTGCTGACGTCATCTTCGGTCGTCA 1745
Query 1784 TAATCCAAGTGGGAAATTACCGATGACGTGGTATCCACAGTCGTATGTAGAGAAAGTTCC 1843
||||||||| ||||| || |||||||| |||||||| || || ||||| |||||||||||
Sbjct 1746 TAATCCAAGCGGGAATTTGCCGATGACTTGGTATCCTCAATCATATGTGGAGAAAGTTCC 1805
Query 1844 GATGAC-AATAATGAACATGAGACCCGATAAAGCAAGCGGGTATCCGGGTCGGACTTACC 1902
|||||| |||| |||||||||||||| ||||| ||| ||||||||||||||||||||||
Sbjct 1806 GATGACGAATA-TGAACATGAGACCCAATAAATCAAACGGGTATCCGGGTCGGACTTACA 1864
Query 1903 GATTCTACACCGGAGAAACAGTATACGCATTCGGAGATGGACTCAGCTACACCAAATTCA 1962
||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||
Sbjct 1865 GATTCTACACCGGAGAAACCGTATACGCCTTCGGAGATGGGCTCAGTTACACTAATTTCA 1924
Query 1963 GTCAC-ACTTTAGTCAAAGCTCC-AAGTCTCGTTTCTCTCGGTCTCGAAGAGAATCACGT 2020
||||| | || | |||||||| ||| || || ||||||| ||| || || || ||||
Sbjct 1925 GTCACCAGATTCTT-AAAGCTCCGAAG-CTAGTCTCTCTCGATCTTGACGAAAACCACGC 1982
Query 2021 TTGCCGATCATCGGAATGTCAATCGCTAGACGCGATCGGACCGCACTGCGAAAACGCTGT 2080
||||||||| |||||||| |||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 1983 TTGCCGATCGTCGGAATGCCAATCGGTGGACGCGATCGGACCGCACTGCGATAACGCCGT 2042
Query 2081 CTCCGGCGGTGGATCGGCGTTT-GAAGTTCATATC-AAGGTACGAAACGGAGGAGATAGA 2138
| || || |||| ||| || ||||| || |||||| | |||| ||||| |||
Sbjct 2043 C---GGAGGAGGATTAAA-TTTCGAGGTTCA-ATTGAAGGTAAGGAACGTCGGAGACAGA 2097
Query 2139 GAAGGGATTCACACGGTGTTTCTATTCACGACGCCGCCGGCGATT-CACGGATCGCCGAG 2197
||||||| |||||||||||||| |||||||||||||||| | | ||||||||||||||
Sbjct 2098 GAAGGGAGCCACACGGTGTTTCTGTTCACGACGCCGCCGGA-AGTACACGGATCGCCGAG 2156
Query 2198 GAAGCAT-TTGGTAGGATTCGAGAAGATTCGATTGGG-GAAGAGGGAAGA-AGCGGTGGT 2254
||||||| || |||| |||||||||||||| || || ||| ||| |||| | ||||| |
Sbjct 2157 GAAGCATCTTC-TAGGGTTCGAGAAGATTCGTTTAGGAGAAAAGG-AAGAGA-CGGTGAT 2213
Query 2255 TAGGTTTAAGGTAGA-GATATGTAAAGATCTGAGTGTGGTTGATGAGATTGGGAAGAGGA 2313
||||||||| || || | | ||||| ||||||||||||||||| ||||| || || ||||
Sbjct 2214 TAGGTTTAACGTCGATG-TGTGTAAGGATCTGAGTGTGGTTGACGAGATCGGAAAAAGGA 2272
Query 2314 AGATTG-GTTTGGGAAAGCATCTTCTTCATGTCGG-AGATTTAAAACATTCCTTAAGCAT 2371
| || | ||| ||| | |||| || || || || || |||||| ||||| || | |||
Sbjct 2273 AAATCGCGTT-GGGTCATTATCTGCTCCACGTGGGTAGTTTTAAA-CATTCATTGACCAT 2330
Query 2372 TAG 2374
|||
Sbjct 2331 TAG 2333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5