BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64600.1 Length=1834 Score E Sequences producing significant alignments: (Bits) Value Ahg496672 jgi|Araly1|496672|fgenesh2_kg.8__2488__AT5G64600.1 3055 0.0 > Ahg496672 jgi|Araly1|496672|fgenesh2_kg.8__2488__AT5G64600.1 Length=1829 Score = 3055 bits (1654), Expect = 0.0 Identities = 1778/1837 (97%), Gaps = 11/1837 (1%) Strand=Plus/Plus Query 1 CTTCATCGAAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTCATCGGAGATGGTGAAACACAGAAACTCATCTCGCTCGATAATCTCATATTCTTCTT 60 Query 61 CAATAGCAAGATTCTTCTCTAGAAAAGCTATTTCTCTCTACTTGATCTTCGTCTTTGCTT 120 ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 61 CAATAGCTAGATTCTTCTCTATAAAAGCTATTTCTCTCTACTTGATCTTCGTTTTTGCTT 120 Query 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATTCAAACCGATGATGACCACACCA 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 TTACCATCTGGGTTCTCGTCTTCAGCTCCAGAAACATACAAACCGATGATGACCACACCA 180 Query 181 AACATCAACAACAACATCATCGGGATCTAATCGATTCAGAATCATTTCCGCCACCGTATT 240 |||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 AACATCAACAAC-A-A-CATCGGGATCTAATCGATTCTGAATCATTTCCGCCACCGTATT 237 Query 241 TGCCTCCTAGGAAGAATTTGCAGAAACCGTATGAAAATACTCAACTTTGGACTCCTCCTT 300 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 238 TGCCACCTAGGAAGAATTTGCAGAAACCGAATGAAAATACTCAACTTTGGACTCCTCCTT 297 Query 301 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCGAAATACAAAGAATTTTCAGAAT 360 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 298 TCAGCTTTGGGTTGCATCCATGTGTCAAACCTACTCCTAAATACAAAGAATTTTCAGAAT 357 Query 361 CAGATCATTATATAACAGTGAAAAGTAATGGTGGACTAAATCAAATGCGTACTGGTATAG 420 ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 358 CAGATCATTATGTAACAGTGAGAAGTAATGGTGGATTAAATCAAATGCGTACTGGTATAG 417 Query 421 CAGATATAGTGGCTGTTGCGCACATCATGAATGCAACTTTAGTCATTCCTGAGCTGGATA 480 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 418 CAGATATAGTCGCTGTTGCCCACATCATGAATGCAACTTTAGTCATTCCTGAGTTGGATA 477 Query 481 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACAATTCA 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 478 AGCGATCGTTTTGGCAAGATTCAAGTGTTTTTTCAGATATTTTTGACGAGGAACACTTCA 537 Query 541 TTAAATCATTGCGAAGAGATGTCAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 600 | ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 538 TAAAATCCCTGAGAAGAGATGTGAAGGTTATTAAAAAGCTCCCAAAGGAAGTGGAATCTC 597 Query 601 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 TACCTAGAGCAAGGAAGCATTTCACTTCTTGGTCTAGTGTTGGATATTATGAAGAAATGA 657 Query 661 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCAAAATCAGATTCTCGCCTTGCAA 720 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 658 CTCACTTGTGGAAGGAGTACAAGGTCATCCATGTCGCGAAATCAGATTCTCGCCTTGCAA 717 Query 721 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGTCGTGTACTATATCGTGGTCTCT 780 ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 718 ATAATGACCTGCCTATCGACGTTCAAAGACTGAGATGCCGTGTACTGTATCGTGGTCTCC 777 Query 781 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GCTTCTCTCCTGCAATTGAAAGCCTTGGACAGAAGCTGGTTGAGAGACTCAAGTCACGTG 837 Query 841 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGATATGTTGGCTTTCACTGGTT 900 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 838 CTGGGAGATATATTGCATTGCACCTGAGATATGAGAAAGACATGTTGGCTTTCACTGGTT 897 Query 901 GCACCTATGGTCTCACTGATGCTGAATCCGAAGAACTGAGAGTAATGCGGGAAAGTACAA 960 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 898 GTACCTATGGTCTCACTGATGCTGAATCCGAGGAACTGAGAGTAATGCGGGAAAGTACAA 957 Query 961 GCCATTGGAAGATCAAAAGTATAAATTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1020 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 958 GCCATTGGAAGATCAAAAGTATAAACTCAACAGAGCAGAGAGAGGAAGGCCTTTGTCCAT 1017 Query 1021 TGACTCCAAAAGAAGTGGGAATATTTCTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1080 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1018 TGACTCCAAAAGAAGTGGGAATATTTTTGAAAGGTCTCGGATATTCTCAGTCAACAGTCA 1077 Query 1081 TATATATTGCAGCAGGGGAAATCTATGGGGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1140 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1078 TATATATTGCAGCAGGGGAAATCTATGGAGGTGATGATAGACTCTCTGAGCTTAAGTCGC 1137 Query 1141 GCTTCCCAAATCTGGTTTTTAAGGAAACGCTTGCTGGGAACGAAGAGTTAAAAGGTTTCA 1200 ||||||||||||| || ||||||||||||||||||||||| || ||||| |||||||||| Sbjct 1138 GCTTCCCAAATCTAGTCTTTAAGGAAACGCTTGCTGGGAAAGAGGAGTTGAAAGGTTTCA 1197 Query 1201 CTGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1260 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CAGGCCATGCGACTAAAACGGCTGCTCTTGATTACATAATTTCTGTTGAGAGTGATGTGT 1257 Query 1261 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 TTGTTCCTTCACATTCTGGAAACATGGCAAGAGCAGTTGAAGGTCACCGCAGATTTCTAG 1317 Query 1321 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGTTAAGATGG 1380 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1318 GGCATCGCAGGACTATCACTCCCGACAGGAAAGGACTAGTGAAACTCTTCGGTAAGATGG 1377 Query 1381 AGAGAGGACAGCTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1440 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 AGAGAGGACAGTTAAAAGAAGGACCAAAGTTGTCCAATTTTGTGAATCAAATGCATAAAG 1437 Query 1441 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 ACAGACAAGGTGCACCGAGGAGAAGGAAAGGACCAACGCAGGGGATCAAAGGACGTGCAC 1497 Query 1501 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 GGTTTAGAACTGAAGAAGCCTTTTATGAGAATCCATATCCAGAGTGTATTTGCAGTTCAA 1557 Query 1561 AGGAGCACAAAGAACCCTAACTAAAATTTTCCAAACtttttttGTTCTGTATCATT-ACA 1619 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1558 AGGAGCACAAAGAACCCTAACTAAA-TTTTCCAAACTTTTTTTGTTCTGTATCATTTACA 1616 Query 1620 T-CTCATTTATAGTCATCTTAATTATAGTTTTCACATATCCCTTGATATCTTTTCTGTTT 1678 | |||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||| Sbjct 1617 TGCTCATTTATAGTCATCTTAATTATAGTTTTTACATATCTCTCGATATCTTT-CTGTTT 1675 Query 1679 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCCAGAAATTTTTAAC-ATTTAGTTAT 1737 ||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| Sbjct 1676 TTGATATCCGGAGATCTCTAGCCGAAGTAGAAAGCTAGAAATTTTTG-CTATTTAGTTAT 1734 Query 1738 AAAACTTCTCTTTCGGCATTTTTTCAAATATTCCAAATTTTAACCAAACTGTTGTCAATC 1797 || |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1735 AA--CTTCTCTTTCGGCATTTTTTCAAAGATTCCAAATTTTAACCAAACTATTGTCAATC 1792 Query 1798 AGAATGGAACAAGAATGAAACACCAAAGTTACTACTG 1834 ||||||||||||||| |||||||||||||||| |||| Sbjct 1793 AGAATGGAACAAGAAAGAAACACCAAAGTTACCACTG 1829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68867162960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5