BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64760.1 Length=1713 Score E Sequences producing significant alignments: (Bits) Value Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1 2218 0.0 Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1 1443 0.0 > Ahg496691 jgi|Araly1|496691|fgenesh2_kg.8__2507__AT5G64760.1 Length=1378 Score = 2218 bits (1201), Expect = 0.0 Identities = 1320/1379 (96%), Gaps = 2/1379 (0%) Strand=Plus/Plus Query 111 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAGACAACTCGAATCGTCGATT 170 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAAACAACTCGAATCGTCGATT 60 Query 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230 ||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 61 GATAGGCTTCTGAACGAAGAGAAGCAGATGAGGCTCGCGGAAAATGTCGCCGGAACTAGA 120 Query 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAAGCAGCTACCGAGATTCTGAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 180 Query 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 181 GAACAGATTTTGAATCTCTCCAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 240 Query 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410 |||||||||||||||||||||||||||||||||| || || ||||||||| |||||||| Sbjct 241 GTGCAACAAGCAATGCAGTATATTGATCAGACACCGGATATCGAAACTCGGGTTGAGCTT 300 Query 411 ATTAAGA-CTCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469 ||||||| || || ||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 ATTAAGACCT-TACTCAACGTATCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 359 Query 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 360 TTTGACCAAGAAGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCAGA 419 Query 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCCATGGCAAAAACTGAGAAAATTGC 479 Query 590 TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAAT 649 |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 480 TTTCATCCTTGAACAAGTCCGCTTGTGTTTGGATCGACGAGATTTTGTCCGTGCACAAAT 539 Query 650 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGAA 709 ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| Sbjct 540 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGACACCAAGAAAGAGAAAAAGAA 599 Query 710 GCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGGT 769 |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| Sbjct 600 ACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCAGCTGATATACCAACATTGTTGGA 659 Query 770 GCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACAT 829 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 660 GCTAAAGCGAATTTACTATGAGCTCATGATTCGGTATTATTCTCACAACAATGAGTACAT 719 Query 830 TGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGA 889 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 720 TGAGATATGCCGTAGCTACAAGGCGATATATGATATTCCTTCGGTAAAGGAAAACCCAGA 779 Query 890 ACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGATCC 949 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 780 ACAATGGATTCCAGTCCTGAGGAAGATCTGCTGGTTTTTGGCCTTGGCACCACATGATCC 839 Query 950 AATGCAATCGAGCCTACTCAATGCAACCTTGGAAGATAAAAAGTTATCAGAGATTCCTGA 1009 |||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 840 GATGCAATCGAGCCTGCTTAATGCAACCTTAGAAGATAAAAAATTATCAGAGATTCCTGA 899 Query 1010 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 959 Query 1070 GAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1129 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 960 GAATAAATACAAGGACGAATTTGAGAGTGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1019 Query 1130 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTCAAA 1189 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1020 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTCGTCTCAAA 1079 Query 1190 GTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1249 ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1080 GTATTATTCAAGGATTACCTTAAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1139 Query 1250 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1199 Query 1310 ACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATCCTCAACTCGTG 1369 |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1200 ACCATCCGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATTCTCAACTCGTG 1259 Query 1370 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAATTCACAA 1429 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1260 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAGATTCACAA 1319 Query 1430 AGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAACCCGGTCTAGCCACACACA 1488 |||||||||||||||||||| ||||||||||||||||||| || || |||||||||||| Sbjct 1320 AGAAACAATGGTTCATAAAGCTGCACTAAGAGCTTGAGAAGCCTGTTTAGCCACACACA 1378 > Ahg487814 jgi|Araly1|487814|fgenesh2_kg.6__948__AT5G09900.1 Length=1681 Score = 1443 bits (781), Expect = 0.0 Identities = 1134/1307 (87%), Gaps = 14/1307 (1%) Strand=Plus/Plus Query 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230 |||||||| ||||| |||||||| |||||||| ||||| ||||| |||||||| || || Sbjct 200 GATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCGGAAAACGTCGCCGGTACAAGG 259 Query 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290 ||||| || || ||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct 260 AAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGAAGCTAAGGATTGGAAGCTTCTGAAT 319 Query 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350 || |||||| | ||||| || ||||||||||||||||| || |||||||| ||||||||| Sbjct 320 GAGCAGATTCTCAATCTGTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAATCCATG 379 Query 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410 ||||| ||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 380 GTGCAGCAAGCTATGCAGTATATTGATCAGACACCAGACATTGAAACTCGGATAGAGCTT 439 Query 411 ATTAAGAC-TCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469 |||||||| | | ||||||||| ||||||||||||||||||| ||||||||||| || || Sbjct 440 ATTAAGACAT-TGAACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGGGCACG 498 Query 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529 | ||||||| |||||||||||||||||||||||| ||| || ||||||||||| || Sbjct 499 CCTCACCAAGAAGCTTGCTAAGATTAAGGAAGAACAGGGTCAAATAGCTGAAGCTGCAGA 558 Query 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589 ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 559 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGCGCTATGGCAAAAACTGAGAAAATTGC 618 Query 590 -TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAA 648 ||| || ||||||||||| |||||||| ||||||| |||||||||| |||||||||| Sbjct 619 ATTT-ATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGCACAAA 677 Query 649 TTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGA 708 | ||||||||||||||||| || ||||| ||||||||||| || | ||| || || |||| Sbjct 678 TCTTATCTAGGAAGATCAATCCTAGAGTTTTTGATGCAGACACAAAGAAAGATAAGAAGA 737 Query 709 AGCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGG 768 | |||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||| Sbjct 738 AACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCTGCTGATATACCAACCTTGTTGG 797 Query 769 TGCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACA 828 ||| || ||||||||||| ||||| ||||||||||| ||| |||| |||||||||||| Sbjct 798 AGCTTAAGCGGATTTACTACGAGCTTATGATTCGGTACTATACTCATAACAATGAGTACC 857 Query 829 TTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAA-ACCCA 887 |||| || |||||||||||||||||||| |||||||||||||||||||| |||| ||| Sbjct 858 TTGAAATCTGCCGTAGCTACAAGGCGATTTATGATATCCCTTCTGTAAAAGAAACACCG- 916 Query 888 GAACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGAT 947 || || |||||||| |||||||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 917 GAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCATGAC 976 Query 948 CCAATGCAATCGAGCCTACTCAATGCAAC-CTTGGAAGATAAAAAGTTATCAGAGATTCC 1006 ||||||||||| ||| | ||||||||||| || |||||| || || |||||||| || || Sbjct 977 CCAATGCAATCAAGCTTGCTCAATGCAACTCT-GGAAGACAAGAATTTATCAGAAATCCC 1035 Query 1007 TGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCT 1066 ||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||| Sbjct 1036 TGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGACATCTCT 1095 Query 1067 CTGGAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGG 1126 ||||| ||||||||||| ||||| ||||| ||||||| |||| ||||||| |||||||| Sbjct 1096 GTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGGTTGGAGGTTCTTTGGG 1155 Query 1127 TGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTC 1186 ||||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| Sbjct 1156 TGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATAATATTCTTGTTGTCTC 1215 Query 1187 AAAGTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACT-G 1245 |||||| ||| ||||||| ||||| ||||||||||| || ||||||||||| | || | | Sbjct 1216 AAAGTATTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCCTGAGCA-TAG 1274 Query 1246 AGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGC-CTTGATAGCAAAAATC 1304 |||| || ||||||||||| || || ||||| ||||| ||||| || ||| |||||||| Sbjct 1275 AGGAGGCGGAGAAGCATCTGTCGGAGATGGTAGTGTCAAAAGCACT-GATTGCAAAAATA 1333 Query 1305 GACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAG-ACAGCAACGAAATCCTCAA 1363 |||||||||||||| || | ||||||||||| | |||| |||||||||| || || || Sbjct 1334 GACAGACCATCAGGGATTGTGTGCTTCCAGATCGC-AAAGGACAGCAACGAGATTCTAAA 1392 Query 1364 CTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAAT 1423 |||||||||| || |||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 1393 CTCGTGGGCAGGGAATTTGGAGAAGCTTTTAGATCTTGTCGAAAAGAGTTGCCACCAAAT 1452 Query 1424 TCACAAAGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAAC 1470 |||||| ||||| |||||||| |||| || || ||| ||||| ||| Sbjct 1453 TCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGAAAAC 1499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64258243315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5