BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64770.1
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496693 jgi|Araly1|496693|fgenesh2_kg.8__2509__AT5G64770.1 798 0.0
> Ahg496693 jgi|Araly1|496693|fgenesh2_kg.8__2509__AT5G64770.1
Length=590
Score = 798 bits (432), Expect = 0.0
Identities = 542/593 (91%), Gaps = 16/593 (3%)
Strand=Plus/Plus
Query 6 TATATAACCAAAGaaaaaaaaCTCTCTTCCAAAAATGGCAATTAGGGTTTCCCACAAGTC 65
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1 TATATAACCAAAGAAAAAAAAATCTCTTCCAAAAATGGCAATTAGGGTTTCCTACAAGTC 60
Query 66 TTTCCTCGTCGCACTTCTTCTCATACTCTTCATTTCCTCTCCTACTCAAGCACGAAGCTT 125
|||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTTCCTCGCCGCAGTTCTTCTCATACTCTTCATTTGTTCTCCTACTCAAGCACGAAGCTT 120
Query 126 ACGAGAAGTAGTAAGGAATAGAACGCTATTGGTTGTGGAGAAGAGTCAAGAGAGTCGGAA 185
||||||| | || |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 121 ACGAGAAATCGTGAGGAATAGAACGCTATTGGTTGTGGAGAAGGGTCAAGCGAGTCGGAA 180
Query 186 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGATGGATATGGATTATAATTC 245
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGGTGGATATGGATTATAATTC 240
Query 246 TGCGAACAAGAAAAGACCGATACACAATCGCTAATAAACACACATGA-A-CTTATCGAAT 303
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 241 TGCGAACAAGAAAAGACCAATACACAATCGCTAATAAACACACATGAGAGCTTATCGAAT 300
Query 304 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACTAAACATAA 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACGAAACATAA 360
Query 364 ATTATAAGAAGTGAGAATGTATTTTATAT--AAGAAAAGAA------GTGAGAATGTAAA 415
||||||||||||||||||||||| ||||| || |||| || |||||||||||||
Sbjct 361 ATTATAAGAAGTGAGAATGTATTATATATTTAAAAAAAAAAAAAAAAGTGAGAATGTAAA 420
Query 416 CTATTATTATTTATAGGAACATATAAATATAAACGACTTTGTATGCAT--GTGTACAGTA 473
|| || ||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 421 ATA--AT-ATTTATATGAACATATAAATATAGACGACTTTGTATGCATATGTGTACAGTC 477
Query 474 TTATCTCGAGGGAAAACAGTTCTATACAATAATCATAGCTTGTGTGTGCTAGCTTTAT-G 532
|||||||||| ||||| ||| |||| ||||||||||||||||||||| | | || |
Sbjct 478 TTATCTCGAGAAAAAACCGTTTTATATAATAATCATAGCTTGTGTGTGTTTTATGTAGAG 537
Query 533 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAACTCTATAATATATTA 585
||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 538 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAGGTCAATAATATATTA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21710530141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5