BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G64780.1

Length=841
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1         946    0.0  


> Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1
Length=773

 Score =  946 bits (512),  Expect = 0.0
 Identities = 640/697 (92%), Gaps = 27/697 (4%)
 Strand=Plus/Plus

Query  144  TAGGGTTTGTGAGATTCGTTCGGACTCTAATGGGGAAGAAACGAAAATCCGAGGCTACGC  203
            ||||||||||  ||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct  102  TAGGGTTTGT--GATTCGTTCGGACTCTAATGGTGAAGAAGCGAAAATCCGAGGCCACGC  159

Query  204  GGCTCGATGAGGTTGATCGAACCATGTATGGCGCGTTTCGAGGCGCTGCTAATTCGCTCT  263
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct  160  GGCTCGATGAGGTTGATCGAACCATGTATGGTGCGTTTCGAGGTGCTGCTAATTCGCTCT  219

Query  264  CGCAGCTCTATACACATGCCATGAATCACCAACGCGTTTCTTTCCTCGCCGGTGAACGTC  323
            | ||||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||||
Sbjct  220  CTCAGCTCTATACTCATGCCATGAATCACCAAAACGTCTCTTTCCTCGCCGGTGAACGTC  279

Query  324  GCGGAATGGAGAAGCTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT  383
            |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  GCGGCATGGAGAAACTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT  339

Query  384  CCACAGCTGATATTACTACCTACTTACAGAATGCGCTTGAATATGAACCTGAGGAGACGT  443
            |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  340  CCACAGTTGATATTACTACCTACTTGCAGAATGCGCTTGAATATGAACCTGAGGAGACGT  399

Query  444  CGATACCACTCCCCATGCAAGAGTTTTATCAGCACCAATTCGCTCCACCAAACGTAAATA  503
            | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  400  CAATACCACTCCCCATGCAAGAGTTTCATCAGCACCAATTCGCTCCACCAAACGTAAATA  459

Query  504  CATCAGTAGCTCATGTTCCTTCAAGTCACATAGCACAACAACAACATTATGATTGTAACC  563
            | |||||||||||||||||||||||||| |||  || ||||||| | |||||||||||||
Sbjct  460  CTTCAGTAGCTCATGTTCCTTCAAGTCATATA--AC-ACAACAATACTATGATTGTAACC  516

Query  564  AAGAGAAACTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG  623
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  AAGAGAAAGTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG  576

Query  624  ACTTCAACTTGTGTGAGGCTGAGTCTGGTAATAATAACTACAATCCCAACTCTACAGGTG  683
            | ||||||||||||||||||||||||||||||||   | ||||||| |||||||||||||
Sbjct  577  AATTCAACTTGTGTGAGGCTGAGTCTGGTAATAAC--C-ACAATCCAAACTCTACAGGTG  633

Query  684  AACACTTATCTTACTGAATAAAATCTTGTTTCATTTGCCGAAAGATGAAAAACATAAATC  743
            || ||||||||||||||| |||||||| ||||||||||| |||  |      |||   ||
Sbjct  634  AAGACTTATCTTACTGAA-AAAATCTTATTTCATTTGCC-AAA--T------CAT---TC  680

Query  744  ATTCCATTGTAAAGTCTCAATTGTTT--GTGGTAAAGTATTGTCTCATGTAATACACAAA  801
               | |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||
Sbjct  681  ---C-ATTGTAAAGTCTCAATTGTTTCTGTGGTAAAGTACTGTCTCATGTAATACACAAA  736

Query  802  ACACTTTTTCCTAATCTTTCAAAGAAGCTGGATGAAT  838
            |||||||||||||||||| |||||||  |||||||||
Sbjct  737  ACACTTTTTCCTAATCTTGCAAAGAAATTGGATGAAT  773



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31108300272


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5