BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64780.1 Length=841 Score E Sequences producing significant alignments: (Bits) Value Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1 946 0.0 > Ahg496694 jgi|Araly1|496694|fgenesh2_kg.8__2510__AT5G64780.1 Length=773 Score = 946 bits (512), Expect = 0.0 Identities = 640/697 (92%), Gaps = 27/697 (4%) Strand=Plus/Plus Query 144 TAGGGTTTGTGAGATTCGTTCGGACTCTAATGGGGAAGAAACGAAAATCCGAGGCTACGC 203 |||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||| Sbjct 102 TAGGGTTTGT--GATTCGTTCGGACTCTAATGGTGAAGAAGCGAAAATCCGAGGCCACGC 159 Query 204 GGCTCGATGAGGTTGATCGAACCATGTATGGCGCGTTTCGAGGCGCTGCTAATTCGCTCT 263 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 160 GGCTCGATGAGGTTGATCGAACCATGTATGGTGCGTTTCGAGGTGCTGCTAATTCGCTCT 219 Query 264 CGCAGCTCTATACACATGCCATGAATCACCAACGCGTTTCTTTCCTCGCCGGTGAACGTC 323 | ||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 220 CTCAGCTCTATACTCATGCCATGAATCACCAAAACGTCTCTTTCCTCGCCGGTGAACGTC 279 Query 324 GCGGAATGGAGAAGCTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 383 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 GCGGCATGGAGAAACTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 339 Query 384 CCACAGCTGATATTACTACCTACTTACAGAATGCGCTTGAATATGAACCTGAGGAGACGT 443 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 340 CCACAGTTGATATTACTACCTACTTGCAGAATGCGCTTGAATATGAACCTGAGGAGACGT 399 Query 444 CGATACCACTCCCCATGCAAGAGTTTTATCAGCACCAATTCGCTCCACCAAACGTAAATA 503 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 400 CAATACCACTCCCCATGCAAGAGTTTCATCAGCACCAATTCGCTCCACCAAACGTAAATA 459 Query 504 CATCAGTAGCTCATGTTCCTTCAAGTCACATAGCACAACAACAACATTATGATTGTAACC 563 | |||||||||||||||||||||||||| ||| || ||||||| | ||||||||||||| Sbjct 460 CTTCAGTAGCTCATGTTCCTTCAAGTCATATA--AC-ACAACAATACTATGATTGTAACC 516 Query 564 AAGAGAAACTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 623 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 517 AAGAGAAAGTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 576 Query 624 ACTTCAACTTGTGTGAGGCTGAGTCTGGTAATAATAACTACAATCCCAACTCTACAGGTG 683 | |||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 577 AATTCAACTTGTGTGAGGCTGAGTCTGGTAATAAC--C-ACAATCCAAACTCTACAGGTG 633 Query 684 AACACTTATCTTACTGAATAAAATCTTGTTTCATTTGCCGAAAGATGAAAAACATAAATC 743 || ||||||||||||||| |||||||| ||||||||||| ||| | ||| || Sbjct 634 AAGACTTATCTTACTGAA-AAAATCTTATTTCATTTGCC-AAA--T------CAT---TC 680 Query 744 ATTCCATTGTAAAGTCTCAATTGTTT--GTGGTAAAGTATTGTCTCATGTAATACACAAA 801 | ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 681 ---C-ATTGTAAAGTCTCAATTGTTTCTGTGGTAAAGTACTGTCTCATGTAATACACAAA 736 Query 802 ACACTTTTTCCTAATCTTTCAAAGAAGCTGGATGAAT 838 |||||||||||||||||| ||||||| ||||||||| Sbjct 737 ACACTTTTTCCTAATCTTGCAAAGAAATTGGATGAAT 773 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31108300272 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5