BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G64850.1
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496705 jgi|Araly1|496705|fgenesh2_kg.8__2521__AT5G64850.1 905 0.0
> Ahg496705 jgi|Araly1|496705|fgenesh2_kg.8__2521__AT5G64850.1
Length=749
Score = 905 bits (490), Expect = 0.0
Identities = 579/619 (94%), Gaps = 17/619 (3%)
Strand=Plus/Plus
Query 24 ATCGACCTGTTACTTTGCTGTATTAAATTTTGGTATACTTTTTCTTTCGCTTATA-A-AT 81
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1 ATCGACCTGTTACTTTGCTGTATTAAATTTTGGTATACTTTTTCTTTAGCTTATATATAT 60
Query 82 TGCTCTGTAT---CACCCATCTTCCTCCTAAGATCATCTTTAAC-TTATTATa-aaaaaa 136
|||||||||| ||||||||||| |||||||||||||| |||| ||| |||| ||||||
Sbjct 61 TGCTCTGTATCACCACCCATCTTCTTCCTAAGATCATCTCTAACTTTA-TATAGAAAAAA 119
Query 137 aaaaaCAGGATTCACTGCTAGCTA-CAGAAGCTTTGA-TCACATGGAAGATCGAAAAGAG 194
|||||||||||||||||||||||| | | | | | ||||||||||||||||||||||
Sbjct 120 AAAAACAGGATTCACTGCTAGCTAGCTG-ATC-ACAATTCACATGGAAGATCGAAAAGAG 177
Query 195 AACAAGAACTCGCCATGGCTATCAGTACCACAGTTTGGAGATTGGGATCAAAAAGGAGGA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AACAAGAACTCGCCATGGCTATCAGTACCACAGTTTGGAGATTGGGATCAAAAAGGAGGA 237
Query 255 TCAATTGATTACTCAATGGATTTCTCAAAGATCAGAGAGATGAGGAAACTCAACAAGAGA 314
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 TCAATTGATTACTCAATGGATTTCTCAAAGATCAGAGAGATGAGGAAACTTAACAAGAGA 297
Query 315 GATGCTTCTCGAGCCAGTCTTGGCAACGAGGAAGAACTCATTAACCCTTTTCATGATCAG 374
||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 298 GATGCTTCTCGAGCCAGTCTTGGTAATGAGGAAGAACTCATTAACCCTTTTCATAATCAA 357
Query 375 CCTCCTGTTGATACTGCCAAGCCTAAGAAGCTAACTACGGTTCACAGTGACAACAACAAC 434
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 CCTCCTGTTGATACTACCAAGCCTAAGAAGCTAACTACGGTTCACAGTGACAACAATAAC 417
Query 435 CGCAATGAGTTCTCTCACCATCACCCACACTCTCCTTCTAGGAGGAGAAGAATCTTCAGC 494
| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 418 CACAATGAGTTCTCTCACCACCACCCACACTCTCCTTCTAGGAGGAGAGGAATCTTCAGC 477
Query 495 TGCTTCAACTGTTGCGTTAAAGCTTAAAGGTGTTT--ACTTTTATTTATGATAATAACAA 552
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 478 TGCTTCAACTGCTGCGTTAAAGCTTAAAGGTGTTTTTACTT--ATTTATGATAATAATAA 535
Query 553 CAAGGGGTGATATTTGAAGACAGAAATGAGAAATGGTAGTGCCACCTTGTTTTCCACATG 612
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 536 CAAGGGGTGATATTTGAAGACAGAAATGAGAAATGGTAGTGACACCTTGTTTTC-ACATA 594
Query 613 TGTTTCTTCGGCTGCATCA 631
||||||||||| |||||||
Sbjct 595 TGTTTCTTCGGATGCATCA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31108300272
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5