BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G64920.1 Length=1555 Score E Sequences producing significant alignments: (Bits) Value Ahg496711 jgi|Araly1|496711|fgenesh2_kg.8__2527__AT5G64920.1 1786 0.0 Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040 106 6e-22 > Ahg496711 jgi|Araly1|496711|fgenesh2_kg.8__2527__AT5G64920.1 Length=1301 Score = 1786 bits (967), Expect = 0.0 Identities = 1234/1352 (91%), Gaps = 61/1352 (5%) Strand=Plus/Plus Query 32 TCCTCTTAATCGGCTTATCGGATCCGAATCCGGACCCGAAAGCCTGAAAACCCGACGATT 91 ||||||||| ||||||||||||||||||| ||||||||| |||| | |||||||||| | Sbjct 1 TCCTCTTAAACGGCTTATCGGATCCGAATACGGACCCGAGAGCCCGTTAACCCGACGA-T 59 Query 92 A-ATTGCACGATGTCCGATGCTCCGTCGTCTTCCCCGGATGCCACGGCGTCGCACTGGTG 150 | || |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 60 ATATAGCACGATGTCCGATGCTCCGTCGTCTTCTCCGGATGCCACGGCATCGCACTGGTG 119 Query 151 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTTGTCGTGTGCTGCGA 210 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 120 CTATCACTGCAACAAACGCGTCGTCGTTGAAACCTTAGATGACTTGGTCGTGTGTTGCGA 179 Query 211 ATGTAACAAAGGTTTCGTCGAGTCAATTCAACCGACTCCCGCCGCTTATTCATCGCCGGC 270 |||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| Sbjct 180 ATGTAACAAAGGTTTCGTCGAGTCAATTCAGCCGATTCCGGCCGCTTATTCATCGCCGGC 239 Query 271 GCCACCGCAGCCACTTTCCCCAGATCTGAATGTAGAAGACTCCAGTATTGGCTCGCATTT 330 |||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 240 GCCACCGCAGCCGCTTTCCCCAGATCTGACTATAGAAGACTCCAGTATTGGCTCGCATTT 299 Query 331 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CCTCCAGATGCTCCGCTTGTTAGCCCACGCGCCTTCTCAGCGTTCACCACCACGACACCT 359 Query 391 TGATGTTTTATCTTACGAAGATGATTTCTTCAGGTTGGAGCTCAATAGTagaaacgaaat 450 |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 360 TGATGTGTTATCTTACGAAGATGATTTCTTCAGATTGGAGCTCAATAGTAGAAACGAAAT 419 Query 451 cgacgatgacgaagacgaagatgaagatgatggagatgaagaagaagagga---tgagga 507 |||||| | | || | |||||||| ||||||||||||||||||||||| |||||| Sbjct 420 CGACGA--A-GTTGA--A-GATGAAGAAGATGGAGATGAAGAAGAAGAGGAGGATGAGGA 473 Query 508 agagaatttaaccgtcaacgacgaagaagacgaagaagaTGATCTGAGGAGGAGAAATCG 567 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 474 AGAGAATTTAACCGTCAACGACGAAGAAGAGGAAGAAGATGATCTGAGGAGGAGAAATCG 533 Query 568 TTTTCCTCTCACGACGACGCAGTCGAGAACCGGAAGAAACAGAATTCTCGATTGGGCTGA 627 ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 534 ATTTCCTCTCACGACGACGCGGTCGAGAACGGGAAGAAACAGAATTCTCGATTGGGCTGA 593 Query 628 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGATCGATACGC 687 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 594 GATTTTGATGGGAATCGAAGACAATTCGATTGAGTTCCGTATGGAATCAGAACGGTACAC 653 Query 688 AGGAAATCCGGCTGATTACATAGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 747 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 654 AGGAAATCCGGCTGATTACATCGACGATGCAGCCGGATACGAAGCTTTGCTACAGAATTT 713 Query 748 AGCAGAAGGAGATGGTGGTGGTGGCGGAGGAAGGAGAGGCGCACCACCGGCTGCGAAATC 807 |||||||||||| ||||||||||| ||| | |||||||||||||||||||||| ||||| Sbjct 714 AGCAGAAGGAGACGGTGGTGGTGGTGGA--A-GGAGAGGCGCACCACCGGCTGCAAAATC 770 Query 808 GGCAATAGAGGCATTGGAGACTTT-CGAGGTTAGTTCTTCGGAGGGAGAGATGGTTATGG 866 ||| ||||| || ||||||||||| | |||||| ||||||||||||||||| |||||||| Sbjct 771 GGCCATAGAAGCGTTGGAGACTTTTC-AGGTTACTTCTTCGGAGGGAGAGACGGTTATGG 829 Query 867 TTTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACTGGTAAGAAGTTACCGTGTG 926 | |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 830 TGTGTGCTGTGTGTAAAGATGGAATGGTGATGGGAGAAACCGGTAAAAAGTTACCGTGTG 889 Query 927 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 986 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 GACATTGTTACCACGGAGATTGTATTGTGCCATGGTTAGGAACAAGGAACTCTTGTCCTG 949 Query 987 TCTGTAGATTCCAGCTTGAGACTGATGATGCTGAATATGAGGAAGAGAGGaaaaaaaGAA 1046 ||||||||||||||||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct 950 TCTGTAGATTCCAGCTTCAGACTGATGATGCTGAGTACGAGGAAGAGAGGAAGAAAAGAA 1009 Query 1047 CTTCTACCGTGTCAGATTCTGCTGCTGCTTCTTCTTCTTCTTCAACTTCTCGTTACTGAA 1106 |||||||| |||||||||||||| ||||||||||||| |||| | | || ||| || Sbjct 1010 CTTCTACCATGTCAGATTCTGCTACTGCTTCTTCTTCGGCTTC---T-C--GTCACT-AA 1062 Query 1107 GTGGAGGAAATGCCCCCATTTGTTGTTACTTTTGTTGTTACTCTTTCTCTTTAGATTAAT 1166 | | || |||||| |||| |||||||||||||||||||||||||| Sbjct 1063 ----A-----T-------TT-GTTGTTCCTTT-GTTGTTACTCTTTCTCTTTAGATTAAA 1104 Query 1167 -CTTTGCTTAGTCTCTCAACACTATTTGGTTGGTTGCATGTTGCATCAAAGAAGCGAGAA 1225 |||||||||||||||||||||| ||||||||||||||| || | | | |||| Sbjct 1105 ACTTTGCTTAGTCTCTCAACACTGTTTGGTTGGTTGCAT----CA--A--GTA---AGAA 1153 Query 1226 AACAGAGAACaaaaaaaaaaaaTCCGGCTCCAAAAAGACAATTGTTATTTGTAAGTGTGT 1285 ||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| Sbjct 1154 AACAGAGAACAAAAAAAAA---TCCGGCTCCAAAA-GACTATTGTTATTTGTAAGTGTGT 1209 Query 1286 TGTATCTTTGGCCTAAACAATCCCATAGTGGTTT-CTTT-GATTCTCAGTTGTTCATAAA 1343 ||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct 1210 TGTATCTTTGGCCTAAACAATTCCATAGTGGTTTTCTTTTGATTCTCAGTTGTTCATAAT 1269 Query 1344 GTTTGCCGAA--ACAAAAAGGTTCCTGGGTTT 1373 |||||||||| |||||||||||||||||||| Sbjct 1270 GTTTGCCGAATCACAAAAAGGTTCCTGGGTTT 1301 > Ahg918289 jgi|Araly1|918289|Al_scaffold_0008_3040 Length=1386 Score = 106 bits (57), Expect = 6e-22 Identities = 62/64 (97%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 1354 ACAAAAAGGTTCCTGGGTTTAGGAGAAACGGTTACAGGACTTCGTGAGCCTTCCCGAAGT 1413 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1384 ACAAAAAGGTTCCTGGGTTT-GGAGTAACGGTTACAGGACTTCGTGAGCCTTCCCGAAGT 1326 Query 1414 ACCT 1417 |||| Sbjct 1325 ACCT 1322 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58239984605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5