BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65020.1 Length=1226 Score E Sequences producing significant alignments: (Bits) Value Ahg496724 jgi|Araly1|496724|fgenesh2_kg.8__2540__AT5G65020.1 1650 0.0 Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 745 0.0 Ahg940493 jgi|Araly1|940493|scaffold_601037.1 741 0.0 > Ahg496724 jgi|Araly1|496724|fgenesh2_kg.8__2540__AT5G65020.1 Length=1175 Score = 1650 bits (893), Expect = 0.0 Identities = 1015/1071 (95%), Gaps = 19/1071 (2%) Strand=Plus/Plus Query 1 TTACTTAAGTAGGACGACGTGCGTCTGCTTCG--TCTCATTACAAAGCAGAAGAAACACA 58 ||||||||| ||||||||||||||||||| || ||||||||| ||||||||| || || Sbjct 1 TTACTTAAGCAGGACGACGTGCGTCTGCTGCGTCTCTCATTAC-AAGCAGAAG-AA-AC- 56 Query 59 AACAGAGGCAGAGATCTTAAGAGTTAAAGACTAATCCCAACAATGGCGTCTCTCAAAGTC 118 | |||| | ||| | | || | | || ||||||||||||||||||||||||| Sbjct 57 -A-AGAGTTAAAGA-C-T--GA--T----CCCAA-CCCAACAATGGCGTCTCTCAAAGTC 103 Query 119 CCAAGCAATGTTCCTCTTCCCGAAGATGACGCCGAGCAACTCCACAAGGCTTTTTCAGGA 178 |||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 104 CCAACCAATGTTCCTCGTCCCGAAGATGACGCTGAGCAACTCCACAAGGCATTTTCAGGA 163 Query 179 TGGGGTACCAACGAGAAGCTGATCATATCAATACTAGCTCACAGGAACGCAGCACAACGC 238 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 164 TGGGGCACCAACGAGAAGCTGATCATATCAATTCTAGCTCACAGGAACGCAGCACAACGC 223 Query 239 AGCTTGATCCGCAGCGTTTATGCAGCTACCTACAATGAGGATCTTCTCAAAGCATTAGAC 298 ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 224 AGCTTAATCCGCAGCGTTTATGCCGCTACCTACAATGAGGATCTTCTCAAGGCATTAGAC 283 Query 299 AAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCACCAGAG 358 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 284 AAAGAGCTTTCTAGTGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCAGCAGAG 343 Query 359 AGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTTCACCAAGAACAATTGGGTTCTT 418 |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 344 AGAGATGCTTATCTAGCTAAAGAATCCACCAAAATGTTCACCAAGAACAATTGGGTTCTT 403 Query 419 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTATCAAGGTCAAGCAAGCTTACCAA 478 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 404 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTTTCAAGGTCAAGCAAGCTTACCAA 463 Query 479 GCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCAACACACATCTGGTGACCTTCGT 538 |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 464 GCTCGATACAAGAAATCACTCGAGGAAGATGTGGCGCAACACACATCTGGTGACCTTCGT 523 Query 539 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 583 Query 599 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAATCTTACAGTGAC 658 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 584 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAAGCTTACAGCGAC 643 Query 659 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGTGCAACACTCAAC 718 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 644 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGCGCAACACTAAAC 703 Query 719 CACTACAACAACGAGTATGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCGGACGAC 778 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 704 CACTACAACAACGAGTACGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCAGACGAC 763 Query 779 AATGACTACATGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 838 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 764 AATGACTACCTGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 823 Query 839 TTTGAGAAGGTTCTTCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 898 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 824 TTTGAGAAGGTTCTGCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 883 Query 899 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 884 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 943 Query 959 AGAAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGACTATGAGGAC 1018 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 944 AGGAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGATTATGAGGAC 1003 Query 1019 ATGCTTGTTGCTCTTCTCGGACATGGCGATGCTTGAAACTGTTTCAACTTT 1069 |||||||||||||||||||||||||| |||||||||||||| ||||| ||| Sbjct 1004 ATGCTTGTTGCTCTTCTCGGACATGGTGATGCTTGAAACTGGTTCAATTTT 1054 Score = 182 bits (98), Expect = 7e-45 Identities = 118/127 (93%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 1102 TTTTAAATAAAAGAGTTGTGAAACTGG-TTCTGCAACTATTTATCAATGATCGTTT-GAG 1159 |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1051 TTTTGAATAAGAGAGTTGTGAAACTGGTTTCTGCAACTATTTATCAATGATCGTTTTGAG 1110 Query 1160 TTTGTTAAATTTGAATCAAAATCTGTTTTTCTTTCTTTTAAATACAATCTAAAGCACAAA 1219 |||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||| Sbjct 1111 TTTGTTAA-TTTGAATCAAAATCTGTTTTCCTTTCTTT-AAATGCAATCTAAAGCACAAG 1168 Query 1220 CTAAAGC 1226 ||||||| Sbjct 1169 CTAAAGC 1175 > Ahg350231 jgi|Araly1|350231|fgenesh1_pg.C_scaffold_6000824 Length=957 Score = 745 bits (403), Expect = 0.0 Identities = 786/970 (81%), Gaps = 29/970 (3%) Strand=Plus/Plus Query 101 ATGGCGTCTCTCAAAGTCCCAAGCAA-TGTTCCTCTTCCCGAAGATGACGCCGAGCAACT 159 ||||||||||||||| | || |||| | |||||||||||||||| ||| ||||||| || Sbjct 1 ATGGCGTCTCTCAAAATTCC-TGCAACTATTCCTCTTCCCGAAGAAGACTCCGAGCAGCT 59 Query 160 CCACAAGGCTTTTTCAGGATGGGGTACCAACG-AGAAGCTGATCATATCAATAC-TAGCT 217 | ||||||| ||| ||||||||| || || | || | ||||||||||||| | | ||| Sbjct 60 CTACAAGGCCTTTAAAGGATGGGGAACTAATGAAG-GGATGATCATATCAAT-CTTGGCT 117 Query 218 CACAGGAACGCAGCACAACGCAGCTTGATCCGCAGC-GTTTATGCAGCTACCTACAATGA 276 ||||| |||||||| || |||||||| |||||| || |||||||| |||| ||||||| | Sbjct 118 CACAGAAACGCAGCGCAGCGCAGCTTCATCCGC-GCTGTTTATGCTGCTAACTACAATAA 176 Query 277 GGATCTTCTCAAAGCATTAGACAAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTT 336 |||||||||||| | |||||||| |||| |||| | ||||||||||||||||||||||| Sbjct 177 GGATCTTCTCAAGGAATTAGACAGAGAGTTTTCCGGTGACTTTGAGAGAGCTGTGATGTT 236 Query 337 GTGGACTCTTGATCCACCAGAGAGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTT 396 |||||||||||||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 237 GTGGACTCTTGATCCAACGGAGAGGGATGCGTATTTGGCCAATGAATCTACCAAAATGTT 296 Query 397 CACCAAGAACAATTGGGTTCTTGTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTAT 456 |||||| |||| ||||||||| |||||||||||||| || || ||| |||||||| || | Sbjct 297 CACCAAAAACATTTGGGTTCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTTTTT 356 Query 457 CAAGGTCAAGCAAGCTTACCAAGCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCA 516 ||||| ||||||||| ||||| ||||| ||||||| || ||||||| |||||||| | Sbjct 357 CAAGGCCAAGCAAGCATACCATGCTCGCTACAAGACCTCTCTCGAGGAGGATGTCGCATA 416 Query 517 ACACACATCTGGTGACCTTCGTAAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGT---A 573 ||||||||||| || |||| ||||| ||| |||||||||||||||| ||||||| | Sbjct 417 CCACACATCTGGAGATGTTCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGA 476 Query 574 T-G-AA-GGAGATGATGTGAACATGATGCTTGCAAGATCTGAAGCTAAGATACTTCACGA 630 | | || | ||||| || ||||||||||||||||||||||||||||||| ||||||| | Sbjct 477 TGGAAACGCTGATGAGGTCAACATGATGCTTGCAAGATCTGAAGCTAAGACACTTCACAA 536 Query 631 GAAGGTCTCAGAGAAATCTTACAGTGACGATGA-CTTCATCAGAATCTTGACAACAAGAA 689 |||| | | ||||| |||||| ||| || || || ||||||||||||||||||||| | Sbjct 537 GAAGATAACTGAGAAGGCTTACACTGATGAAGATCT-CATCAGAATCTTGACAACAAGGA 595 Query 690 GCAAAGCACAGCTCGGTGCAACACTCAACCACTACAACAACGAGTATGGAAACGCCATTA 749 ||||||| ||| || ||||||| ||||| |||| ||| | ||| ||||| |||||| Sbjct 596 GCAAAGCTCAGATCAGTGCAACGCTCAATCACTTCAAGGATAAGTTTGGAAGTTCCATTA 655 Query 750 ACAAGAA-CTTGAAGGAAGAGTCGGACGACAATGACTACATGAAACTACT-AAGAGCTGT 807 ||||| || ||||||||| || |||| ||| || | || |||| || | | | Sbjct 656 ACAAGTTTCT-GAAGGAAGATTCCAACGA---TGATTATGTTCAATTACTCAAAACC-GC 710 Query 808 AATCACATGTTTGACATACCCTGAGAAGCATTTTGAGAAGGTTCTTCGTCTATCAATCAA 867 |||| ||| |||||||| || |||||| | |||||||||||||| |||| | | ||||| Sbjct 711 GATCAAATGCTTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAA 770 Query 868 CAAAATGGGAACAGACGAATGGGGACTAACCCGAGTCGTGACTACACGAACTGAAGTTGA 927 ||| |||||||||||||| |||| ||| || |||| || ||||| ||| | || || || Sbjct 771 CAAGATGGGAACAGACGAGTGGGCACTTACTAGAGTAGTCACTACGCGAGCAGAGGTCGA 830 Query 928 CATGGAACGCATCAAAGAGGAATA-TCAGCGAAGAAACAGCATTCCT-TTGGACCGTGCT 985 |||||| || |||||||||||||| | | || || |||||| ||||| ||| | || || Sbjct 831 CATGGAGCGAATCAAAGAGGAATACTTA-CGCAGGAACAGCGTTCCTCTTG-ATCGAGCC 888 Query 986 ATCGC-CAAAGACACTTCTGGTGACTATGAGGACATGCTTGTTGCTCTTCTCGGACATGG 1044 || || ||| ||||||||||||||||| || | |||||| | || ||||| ||||||| Sbjct 889 ATTGCTCAA-GACACTTCTGGTGACTACAAGAATATGCTTCTCGCCCTTCTTGGACATGA 947 Query 1045 CGATGCTTGA 1054 | |||||||| Sbjct 948 CCATGCTTGA 957 > Ahg940493 jgi|Araly1|940493|scaffold_601037.1 Length=986 Score = 741 bits (401), Expect = 0.0 Identities = 792/976 (81%), Gaps = 45/976 (5%) Strand=Plus/Plus Query 100 AATGGCGTCTCTCAAAG-TCCCAAG-CAATGTTCCTCTTCCCGAAGATGACGCCGAGCAA 157 ||||||||||||||| | |||| | ||||||||||||||| ||||| ||||| |||||| Sbjct 21 AATGGCGTCTCTCAAGGTTCCC--GCCAATGTTCCTCTTCCAGAAGAAGACGCTGAGCAA 78 Query 158 CTCCACAAGGCTTTTTCAGGATGGGGTACCAACGAGAAGCTGATCATATCAATAC-TAGC 216 |||||||| || ||| ||||||||| ||||| ||| | ||||||||||||| | | || Sbjct 79 CTCCACAAAGCCTTTAAAGGATGGGGAACCAATGAGGGGATGATCATATCAAT-CTTGGC 137 Query 217 TCACAGGAACGCAGCACAACGCAGCTTGATCCGCAGC-GTTTATGCAGCTACCTACAATG 275 |||||| || ||| | |||||||| || || || || |||||||| |||| ||||||| Sbjct 138 TCACAGAAATGCAACGCAACGCAGTTTCATTCG-TGCTGTTTATGCTGCTAACTACAATA 196 Query 276 AGGATCTTCTCAAAGCATTAGACAAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGT 335 ||||||||||||| | |||||||| ||||||||| | ||||||||| |||||||||||| Sbjct 197 AGGATCTTCTCAATGAATTAGACAGAGAGCTTTCCGGTGACTTTGAGCGAGCTGTGATGT 256 Query 336 TGTGGACTCTTGATCCACCAGAGAGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGT 395 |||||||| |||| ||| | |||||||||||||||||||| |||||||| ||||| |||| Sbjct 257 TGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAAGAATCTACCAAAATGT 316 Query 396 TCACCAAGAACAATTGGGTTCTTGTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTT- 454 ||||||| ||||||||||||||||| ||| ||||||| || || ||||||||||| || Sbjct 317 TCACCAAAAACAATTGGGTTCTTGTCGAAGTCGCTTGTACTAGATCTGCTCTTGAG-TTC 375 Query 455 ATCAAG-GTCAAGCAAGCTTACCAAGCTCGATACAAGAA-ATCAATCGAGGAAGATGTCG 512 || || | ||||||||| |||||||| || ||||| || || |||||||||| |||| Sbjct 376 TTC-AGTGCCAAGCAAGCATACCAAGCCCGTTACAA-AACCTCTCTCGAGGAAGACGTCG 433 Query 513 CGCAACACACATCTGGTGACCTTCGTAAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGT 572 | | ||||||||||| ||| |||| ||||||||| ||||||||||||||||||| |||| Sbjct 434 CATACCACACATCTGGAGACATTCGAAAGCTCTTGGTTCCTCTTGTGAGCACTTTTAGGT 493 Query 573 ATGAAGGAGATGATGTGAACATGATGCTTGCAAGATCTGAAGCTAAGATACTTCA-CGAG 631 | || |||||||| ||||||||| |||| || || || || |||||||||||||| | || Sbjct 494 ACGATGGAGATGAAGTGAACATGGTGCTAGCTAGGTCAGAGGCTAAGATACTTCATC-AG 552 Query 632 AAGGTCTCA-GAGAAATCTTACAG-TGACGATGACT-TCATCAGAATCTTGACAACAAGA 688 ||| || | ||||| |||| | ||| || || | ||||||||||||||||||||||| Sbjct 553 AAGATC-GAGGAGAAGGCTTA-TGTTGATGACGA-TCTCATCAGAATCTTGACAACAAGA 609 Query 689 AGCAAAGCACAGCTCGGTGCAACACTCAACCACTACAACAACGAGTAT-GGAAACG-CCA 746 |||||||| || || | ||||| ||||| |||||||| ||| | | | |||| | ||| Sbjct 610 AGCAAAGCTCAAATCAGCGCAACTCTCAATCACTACAAAAACAATT-TCGGAA-CTTCCA 667 Query 747 TTAACAAGA-ACTTGAAGGAAGAGTCGGACGACAATGACTACATGAAACTACTAAGAGCT 805 | ||| | || | ||||| || ||||| ||| | | | || | || | || ||| Sbjct 668 TGGCCAA-ATACCTAAAGGAGGATTCGGAATACATT--C-A-ATTA--CT-C-AA-AGCC 717 Query 806 GTAATCACATGTTTGACATACCCTGAGAAGCATTTTGAGAAGGTTCTTCGTCTATCAATC 865 || |||| ||| |||||||| || |||||| |||| ||||| ||||| |||| | | ||| Sbjct 718 GTGATCAAATGCTTGACATATCCAGAGAAGTATTTCGAGAAAGTTCTACGTCAAGCCATC 777 Query 866 AACAAAATGGGAACAGACGAATGGGGACTAACCCGAGTCGTGACTACACGAACTGAAGTT 925 |||||| ||||||||||||| |||||||| || |||| || ||||||||| | || ||| Sbjct 778 AACAAACTGGGAACAGACGAGTGGGGACTTACGAGAGTGGTCACTACACGAGCAGA-GTT 836 Query 926 -GACATGGAACGCATCAAAGAGGAATATC-AGCGAAGAAACAGCATTCCT-TTGGACCGT 982 ||||||||||| ||||||||||||||| | || |||||||| ||||| ||| | || Sbjct 837 TGACATGGAACGGATCAAAGAGGAATATTTA-CGTAGAAACAGTGTTCCTCTTG-ATCGA 894 Query 983 GCTATCGCCAAAGACACTTC-TGGTGACTATGAGGACATGCTTGTTGCTCTTCTCGGACA 1041 || || || ||||||||| | ||||||||||||||| || ||| | |||||||||||||| Sbjct 895 GCCATTGCTAAAGACACT-CATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGACA 953 Query 1042 TGGCGATGCTTGAAAC 1057 || | ||||||||||| Sbjct 954 TGACCATGCTTGAAAC 969 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45785623317 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5