BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65050.3 Length=964 Score E Sequences producing significant alignments: (Bits) Value Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 1059 0.0 Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 824 0.0 Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 710 0.0 > Ahg497339 jgi|Araly1|497339|fgenesh2_kg.233__4__AT5G65050.3 Length=767 Score = 1059 bits (573), Expect = 0.0 Identities = 708/772 (92%), Gaps = 14/772 (2%) Strand=Plus/Plus Query 26 aaaaaaaaaaaaaaaaggagagagagagagagagagagagagagagaaacgaagaaaaaa 85 |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 AAAAAAAAAAAAAAAA-GAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAACGAAGAAAAAG 59 Query 86 aaagaagcaaaaaaCATTGTGGGTCTCCGGTGATTAGGATCAAATTAGGGCACCAGCCTT 145 |||||||| |||||||||||||||||| ||||||||| |||||||||||||| |||||| Sbjct 60 AAAGAAGC-AAAAACATTGTGGGTCTCTGGTGATTAGAATCAAATTAGGGCATAAGCCTT 118 Query 146 ATCGGAGGAAGAAGCCATGGGTAGaaaaaaaGTCGAGATCAAGCGAATCGAGAACAAAAG 205 ||||||| ||||||||||||| |||| ||| |||||||||||||||||||||| |||||| Sbjct 119 ATCGGAGAAAGAAGCCATGGGAAGAAGAAAGGTCGAGATCAAGCGAATCGAGAGCAAAAG 178 Query 206 TAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGAGAAAGCTCGACAACT 265 ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 179 CAGTCGACAAGTTACTTTCTCCAAACGACGCAAAGGTCTCATCGAGAAAGCTCGACAACT 238 Query 266 TTCAATTCTCTGTGAATCTTCCATCGCTGTTCTCGTCGTCTCCGGCTCCGGAAAACTCTA 325 ||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||| Sbjct 239 TTCAATTCTCTCTGAATCTTCCATCGCTGTTCTCGCCGTCTCTGGCTCTGGAAAACTCTA 298 Query 326 CAA-GTCTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTACGAAATACATCATG 384 ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 299 CAACG-CTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTATGAAATACATCATG 357 Query 385 CTGATGAACTTGAA-GCCTTAGATCTTGCAGAAAAAACTCGGAATTATCTGCCACTCAAA 443 |||||||||| ||| |||||||||||||||||||||| |||||||||||| |||| ||| Sbjct 358 CTGATGAACT-GAAAGCCTTAGATCTTGCAGAAAAAATTCGGAATTATCTTCCACACAAG 416 Query 444 GAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTG 503 ||| ||||||||||||| |||||||||||||||||| |||||||||||| || |||||| Sbjct 417 GAGATACTAGAAATAGTTCAAAGCAAGCTTGAAGAACCAAATGTCGATACTGTAAGTGTA 476 Query 504 GATACTTTAATTTCTCTGGAGGAACAGCTCGAGACTGCTCTGTCCGTAACTAGAGCTAGG 563 ||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||| | Sbjct 477 GATTCTCTAATTTCTATGGAGGAACAGCTCGAGACTACTCTGTCCGTAATTAGAGCTAAG 536 Query 564 AAGACAGAACTAATGATGGGGGAAGTGAAGTCCCTTCAAAAAACGGAGAACTTGCTGAGA 623 ||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| Sbjct 537 AAGACAGAACTAATGATGGAGGAAGTGAAGTCCCTTCAAGAAACGGAGATGTTGCTGAGA 596 Query 624 GAAGAGAACCAGACTT-TGGCTAGCCAG-----GT-GGGGAAGAAGACGTTTCTGGTTAT 676 ||||||||||||| || |||||||||| || ||||||||| ||||||||||| | Sbjct 597 GAAGAGAACCAGA-TTCTGGCTAGCCATACCCAGTTGGGGAAGAATACGTTTCTGGTAAC 655 Query 677 AGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGAGACTCT 736 ||||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 656 AGAAGGTGAGAGAAGAATGTCACGGGAAAATGGCTCCGGCAACAAAGTACCTGAGACTCT 715 Query 737 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTGAGCTTTCACCTTAAACT 788 |||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 716 TCCGCTGCTCAAGTAATCACCATCATCAACGGCTCAGTTTTCACCTTAAACT 767 > Ahg496727 jgi|Araly1|496727|fgenesh2_kg.8__2543__AT5G65050.2 Length=704 Score = 824 bits (446), Expect = 0.0 Identities = 548/596 (92%), Gaps = 11/596 (2%) Strand=Plus/Plus Query 62 agagagagagaaacgaagaaaaaaaaagaagcaaaaaaCATTGTGGG-----T-CTCCGG 115 |||||||||||||||||| ||||||||||||| ||| |||||||||| | |||||| Sbjct 2 AGAGAGAGAGAAACGAAGCAAAAAAAAGAAGC-AAAGACATTGTGGGTCTCCTCCTCCGG 60 Query 116 TGATTAGGATCAAATTAGGGCACCAGCCTTATCGGAGGAAGAAGCCATGGGTAGaaaaaa 175 ||| |||||||||||||||||| | ||||||||| | || |||||||||| |||| ||| Sbjct 61 TGAGTAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAAA 120 Query 176 aGTCGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACG 235 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 AGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACG 180 Query 236 CAATGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGT 295 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 181 CAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGT 240 Query 296 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAA-GTCTGCCTCCGGTGACAACATGTCAA 354 ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 241 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACG-CTGCTTCCGGTGACAACATGTCAA 299 Query 355 AGATCATTGATCGTTACGAAATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAG 414 ||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| Sbjct 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359 Query 415 AAAAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 474 |||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419 Query 475 AAGAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCG 534 ||||| |||||||||||| || |||||| ||| || |||||||| ||||||||||||||| Sbjct 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479 Query 535 AGACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGT 594 |||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||| Sbjct 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGAAGTGAAGT 539 Query 595 CCCTTCAAAAAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCA 649 |||||||| ||||||||| |||||||||||||||||||||| || |||||||||| Sbjct 540 CCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGA-TTCTGGCTAGCCA 594 > Ahg476870 jgi|Araly1|476870|fgenesh2_kg.2__2000__AT1G77080.2 Length=848 Score = 710 bits (384), Expect = 0.0 Identities = 664/792 (84%), Gaps = 48/792 (6%) Strand=Plus/Plus Query 121 AGGATCAAATTAGGGCACCAGCCTTATCGGAGGA-AGAAGCCATGGGTAGaa-aaaaaGT 178 ||||| ||||||||||| | |||||||||| || ||||||||||| |||| ||||| | Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGA-GATTGAAGCCATGGGAAGAAGAAAAA-T 58 Query 179 CGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACGCAA 238 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 59 CGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAA 118 Query 239 TGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTCT 298 ||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||| | Sbjct 119 TGGTCTCATAGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGT 178 Query 299 CGTCGTCTCCGGCTCCGGAAAACTCTACAAGTCTGCCTCCGGTGACAACAT-GTCAAAGA 357 ||||||||| | |||||||||||||||| ||||| ||||||||||| | || | || | Sbjct 179 CGTCGTCTCTGCCTCCGGAAAACTCTACGAGTCTTCCTCCGGTGACGAGATAG--AA-GC 235 Query 358 TCATTGATCGTTACGAA-ATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAGAA 416 | | | || || | ||| | | | | ||| ||||| | || |||||||||||| Sbjct 236 GC-TGG-TCAAGCCGGAGATA-A-C-T-CA-ATGTT-TTGAA-C-TT-GATCTTGCAGAA 284 Query 417 AAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAA 476 |||| || ||||||||| |||| ||| ||||||||||| | ||||||||||||||||||| Sbjct 285 AAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAGACAGTCCAAAGCAAGCTTGAA 344 Query 477 GAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCGAG 536 ||| ||||||||||||||| |||||| ||| || ||||||||||||||||||| |||||| Sbjct 345 GAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTCGAG 404 Query 537 ACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGTCC 596 |||||||||||||||| ||| ||||||||| ||||||| ||||||| | | ||||||||| Sbjct 405 ACTGCTCTGTCCGTAAGTAGGGCTAGGAAGGCAGAACTGATGATGGAGTATGTGAAGTCC 464 Query 597 CTTCAAA-AAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCAGGTGG 654 || ||| ||| ||||| |||||||| |||||||||||| || ||||||||||| ||| Sbjct 465 -TTAAAAGAAAAGGAGATGTTGCTGAGGGAAGAGAACCAGG-TTCTGGCTAGCCAGATGG 522 Query 655 GGAAGAAGACGTTTCTGGTTATAGAAGG-TGACAGAGGAATGTCATG--GGAAAATGGCT 711 ||||||| ||||| |||| ||||| || ||| |||||||||| || ||||| | ||| Sbjct 523 GGAAGAATACGTTGCTGGCAATAGA-GGATGAGAGAGGAATGT--TGCCGGAAAGTAGCT 579 Query 712 CCGGCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGTAATCACCATCATCAACGGCT- 770 ||||||||||| ||| ||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 580 CCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAAGTAACCACCATCATCAACGGCTT 639 Query 771 GAGCTTTC-ACCTTAAACTTA-CAGCCTGATTCAGAA-GTTTTTA-CAAATTTGTAAATT 826 ||| |||| | |||||||| | | ||||||||||||| | | || ||||||||||| Sbjct 640 GAGTTTTCCAGCTTAAACTCAAC-GCCTGATTCAGAATGAAGAAAACATATTTGTAAATT 698 Query 827 -ATAAAAAGCTTCATAATAATCTCAA-CCTTTTTATCTTCCTCGCGCCAATGTGGAAATT 884 |||||||||| || ||||||||| |||||| ||||||||| | ||||||| || Sbjct 699 TATAAAAAGCTG--TA-TAATCTCAAACCTTTT-ATCTTCCTCTAG----TGTGGAA-TT 749 Query 885 AA-GGTTAAAAA 895 || ||||||||| Sbjct 750 AAAGGTTAAAAA 761 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35797419063 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5