BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65220.1
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951366 jgi|Araly1|951366|scaffold_803253.1 876 0.0
> Ahg951366 jgi|Araly1|951366|scaffold_803253.1
Length=567
Score = 876 bits (474), Expect = 0.0
Identities = 536/565 (95%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 49 TCTTCTTCCTCCGCCATAGCTACAATGCTTAGTCTCTCAATCGCTACGCCGGG-GACGGC 107
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||
Sbjct 1 TCTTCTTCTTCCGCCATAGCTACAATGCTTAGTCTCTCAATTGCTACGCCGGGTG-CGGC 59
Query 108 GGCGATTTTTCGTAGAGGAACTGCTT-CGGCGACTTCAACTTCGTCTTCATTCCATGGTG 166
||||||||| ||| ||||||| |||| ||| |||||||||||||||||| |||||||| |
Sbjct 60 GGCGATTTTCCGTCGAGGAACAGCTTCCGG-GACTTCAACTTCGTCTTCTTTCCATGGAG 118
Query 167 TCAGAATCCAGCACCAGGTTTCTGCTCGCGTCCCCGCGGCGGCGACGATATCGTCGTCGT 226
||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 119 TCAGAATCCAGCAACAGGTCTCTGCTCGCGTCCCCGCGGCGGCGACGAT-T--TCGTCGT 175
Query 227 CTCCTAAACCGTCGGTGGTGATGATGTCGAAAAGAGAGGCGGAATTGAAAGAGATAAGAT 286
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTCGTAAACCGTCGGTGGTGATGATGTCGAAAAGAGAGGCGGAATTGAAAGAGATAAGAT 235
Query 287 CGAAGACGACGGAGCAGTTACAAGAGGAGGTTGTTGACCTTAAAGGTGAGCTCTTTATGC 346
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 236 CAAAGACGACGGAGCAGTTACAAGAGGAGGTTGTTGACCTTAAAGGAGAGCTCTTTATGC 295
Query 347 TTCGTCTCCAGAAATCGGCAAGGAATGAGTTCAAATCTAGCGACTTTCGTCGTATGAAGA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTCGTCTCCAGAAATCGGCAAGGAATGAGTTCAAATCTAGCGACTTTCGTCGTATGAAGA 355
Query 407 AACAAGTTGCTCGGATGTTGACGGTTAAAAGAGAGAGGGAGATCAAAGAAGGGATAAAGA 466
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 356 AACAAGTTGCCCGGATGTTGACGGTAAAAAGAGAGAGGGAGATCAAAGAAGGGATAAAGA 415
Query 467 AAAGGTTGTCGAGGAAACTTGACAGACAATGGAAGAAAAGCATAGTACCAAGACCACCTC 526
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 416 AAAGGTTGTCGAGGAAACTTGACCGACAATGGAAGAAAAGCATTGTACCGAGACCACCTC 475
Query 527 CGTCTCTGAAGAAACTTCAAGAAGAAGAAGCTGCAGAAGAAGCAGCTGAAGCTGCTAAAT 586
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 CTTCTCTGAAGAAGCTTCAAGAAGAAGAAGCTGCAGAAGAAGCAGCTGAAGCTGCCAAAT 535
Query 587 CTGCTTGAAAAAACCCGCTATTGAT 611
||||||||||||||| || ||||||
Sbjct 536 CTGCTTGAAAAAACC-GCCATTGAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28401573165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5