BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65320.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358733 jgi|Araly1|358733|fgenesh1_pg.C_scaffold_8002520 1110 0.0
> Ahg358733 jgi|Araly1|358733|fgenesh1_pg.C_scaffold_8002520
Length=846
Score = 1110 bits (601), Expect = 0.0
Identities = 766/843 (91%), Gaps = 21/843 (2%)
Strand=Plus/Plus
Query 133 CATCCTTAAGTTACGAAATGTTGGATTACTTTCAAAACATCGTCGTTTCGAACTCTGAAG 192
|||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 23 CATCCTTAAGCTACGAAATCTTGGATTACTTACAAAACTTCGTCGTTTCGAACTCTGAAA 82
Query 193 ACGTGGCGTCACAGCAAAATTCCATTTCGTCCTCTTCTTATTCATCAGCGACACTCTCCT 252
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 83 ACGTGGCGTCACAACAAAATTCCCTTTCTTCCTCTTCTTATTCATCAGCGACACTCTCTT 142
Query 253 GCTCCATAACAGAGCAAAAATCTCACTTAACTGAAAAGTTATCTCCTCTACGAGAAAGAT 312
|||||||||||||| |||||||||||||||| ||||||||||||||| | |||||| |||
Sbjct 143 GCTCCATAACAGAGGAAAAATCTCACTTAACGGAAAAGTTATCTCCTGTGCGAGAACGAT 202
Query 313 ATGGTTGCGGTGACTTTCTGTCGCGGAAGAGGAGAAGGAGAAGTGAAAAAACGATTGTAG 372
||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 203 GTGGTTGCGGTGACGTACTGTCGCGGAAGAGGAGAAGGAGAAGTGAAAAAACGATGGAAG 262
Query 373 ATAAAGAGAATCAAAGGATGAATCACATTGCCGTCGAGCGTAACCGGAGAAAACAGATGA 432
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 263 ATAAAGAGTACCAAAGGATGAATCACATTGCTGTCGAGCGTAACCGGAGAAAACAGATGA 322
Query 433 ATCATTTTCTGTCTATCCTCAAGTCTATGATGCCTCTCTCTTATTCTCAACCTAATGACC 492
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 323 ATCATTTTCTGTCTATCCTCAAATTTATGATGCCTCTCTCTTATTCTCAACCTAATGACC 382
Query 493 AAGCATCAATCATAGAAGGGACCATTAGCTATCTGAAGAAGCTAGAACAACGTCTCCAAT 552
||||||||||||||||||||||||||| |||| | |||||||||||||| ||||| ||||
Sbjct 383 AAGCATCAATCATAGAAGGGACCATTAACTATGTCAAGAAGCTAGAACATCGTCTTCAAT 442
Query 553 CTCTCGAAGCCCAATTAAAAGCTACTAAACTCAATCAATCACCAAATATATTTTCCGACT 612
| ||||||||||||||||||||||| |||| |||| ||||||| || |||||||||||||
Sbjct 443 CACTCGAAGCCCAATTAAAAGCTACCAAACCCAATAAATCACCCAACATATTTTCCGACT 502
Query 613 TCTTCATGTTCCCTCAATACTCCACCGCCACTGCCACTGCCACCGCCACTGCCTCCTCAT 672
||||||||||||| |||||||||||| || | ||| | |||||||
Sbjct 503 TCTTCATGTTCCCCCAATACTCCACC---AC--C----GCC--------T-CCTCCTC-- 542
Query 673 CCTCCTCGAGCCACCACCATCACAAGCGACTAGAGGTGGTTGCTGACGTGGAGGTTACAA 732
|| |||| || ||| |||| |||||||||||| || |||||||||||||||||||||||
Sbjct 543 CC-CCTCAAGTCACTACCACCACAAGCGACTACCGGCGGTTGCTGACGTGGAGGTTACAA 601
Query 733 TGGTAGAAAGACATGCCAACATTAAAGTGTTAACGAAGACACAGCCAAGATTGCTCTTCA 792
||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 602 TGGTAGAAAAACATATCAACATTAAAGTGTTAACAAAGACACGGCCAAGATTGCTCTTCA 661
Query 793 AGATTATCAATGAGTTTAACTCTTTAGGTTTAAGTACTCTTCATCTCAACCTCACAACTT 852
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGATTATCAATGAGTTTTACTCTTTAGGTTTAAGTACTCTTCATCTCAACCTCACAACTT 721
Query 853 CCAAAGACATGTCTCTCTTCACTTTTAGCGTCAAGGTAGAGGCAGATTGTCAATTGACGC 912
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 722 CCAAAGACATGTCTCTCTTCACGTTTAGCGTAAAGGTAGAGGCAGATTGTCAATTGATGC 781
Query 913 CTTCTGGTAATGAGGTCGCAAATACGGTGCATGAAGTCGTTAGAAGAGTTCACAAGGAAC 972
|||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 782 CTTCTGGTAATGAGATCGCAAATGCGGTGCATGAAGTCGTTAAAAGAGTTCACAAGGAAA 841
Query 973 GTT 975
|||
Sbjct 842 GTT 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5