BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65380.1

Length=1800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1        2750    0.0  


> Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1
Length=1743

 Score = 2750 bits (1489),  Expect = 0.0
 Identities = 1664/1748 (95%), Gaps = 13/1748 (1%)
 Strand=Plus/Plus

Query  2     tctctcgtcttcaccattcttctcacttcttcttttctccttatatttcatttcttcCAC  61
             ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct  1     TCTCTCGTCTTCACCATTCTTCTCACTGCTTCTTTTCTCCTTATATTTCATTTCGTCCAC  60

Query  62    ATAACTaaaaaaaaaaGGAATTAGCGATGAGGGGAGGTGATGGAGAAGAAGGATCGGAGT  121
             ||||||  ||||||||||||||||||||||| ||| |||  |||||||||||||||||||
Sbjct  61    ATAACT--AAAAAAAAGGAATTAGCGATGAGAGGAAGTGGCGGAGAAGAAGGATCGGAGT  118

Query  122   CAAGAGTTGCACTGTTGAAAAGTCCTCACACGGCGGAGGAAGACGGTGAAGGATTGAAGG  181
             | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| 
Sbjct  119   CGAGAGTTGCACTGTTGAAAAGTCCTCACACGGGGGAAGAAGACGGTGAAGGATTGAAGA  178

Query  182   ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATAGTTGGTCCGGCCATATTCAGTC  241
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  179   ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATCGTTGGTCCGGCCATATTCAGTC  238

Query  242   GAGTAACGACATATTCGATGCTTGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC  301
             || | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct  239   GAATTACGACATATTCGATGCTTATCATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC  298

Query  302   TTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT  361
             | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  299   TCGAACTCGCCGCCATCTCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT  358

Query  362   TGCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCGAAGAAAT  421
             |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  359   TGCTTGGAATGGCGAGCGCGTTGGAAACGCTGTGTGGGCAAGCGTTTGGAGCGAAGAAAT  418

Query  422   ATCATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGCTGTGTCT  481
             || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  419   ATTATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGTTGTGTCT  478

Query  482   TGTTATTACCAACTTATATTTTCACTACTCCGGTTCTTAAATTTCTTGGTCAACCGGACG  541
             ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  479   TGTTATTACCAACTTATATTTTCACTACTCCAGTTCTCAAATTTCTTGGTCAACCGGACG  538

Query  542   ATATCGCTGAGCTGTCCGGTGTTGTCGCCATTTGGGTCATACCGCTTCATTTCGCCTTCA  601
             ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  539   ATATCGCTGAGCTTTCCGGTGTTGTCGCCATTTGGGTCATACCTCTTCATTTCGCCTTCA  598

Query  602   CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAGTGACTGCGT  661
             |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct  599   CTTTCTCTTTTCCCCTTCAACGTTTCCTCCAGTGCCAGCTCAAAAACCAAGTGACTGCGT  658

Query  662   ATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGC  721
             |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct  659   ATGCCGCAGCCGTTGCATTGGTAGTTCACATTTTAGTGTGTTGGTTGTTCGTGGACGGAC  718

Query  722   TTAAACTAGGAGTCGTGGGGACTGTAGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC  781
             |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  719   TTAAACTAGGAGTCGTCGGGACTGTGGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC  778

Query  782   TTATTCTGTTAGTTTACTCTACTTGTGGTGGTTGTCCGCTTACTTGGACCGGCTTATCCT  841
             ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| | ||||
Sbjct  779   TTATTCTATTGGTTTACTCTACTTGTGGCGGTTGTCCACTTACTTGGACCGGCCTCTCCT  838

Query  842   CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCAGGCGTCATGC  901
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  839   CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCCGGCGTCATGC  898

Query  902   TCTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAAAATG  961
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  899   TTTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAGAATG  958

Query  962   CTCGAATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA  1021
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  959   CTCGCATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA  1018

Query  1022  TACCTCTCGCTTTCTTCGCCGGAACCGGTGTCCGTGTGGCGAACGAATTAGGAGCTGGTA  1081
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1019  TACCTCTCGCTTTCTTCGCCGGAACCGGTGTTCGTGTGGCGAACGAATTAGGAGCTGGTA  1078

Query  1082  ATGGTAAAGGAGCAAGATTTGCGACGATTGTATCGGTAACACAATCGTTGATAATCGGAT  1141
             |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1079  ATGGCAAAGGAGCAAGATTTGCGACGATTGTATCAGTAACACAATCGTTGATAATCGGAT  1138

Query  1142  TGtttttttGGGTGCTAATAATGCTTCTCCATAACCAAATCGCATGGATCTTCTCTTCGA  1201
             |||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1139  TGTTTTTCGGGGTGCTAATAATGCTTCTCCATACCCAAATCGCATGGATCTTCTCTTCGA  1198

Query  1202  GTGTAGCCGTCTTAGACGCCGTCAATAAACTCTCACTTCTGCTAGCTTTCACCGTTCTTC  1261
             |||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct  1199  GTGTAGCCGTCTTAGACGCCGTTAATAAACTTTCACTTCTGTTAGCTTTCACCGTTCTTC  1258

Query  1262  TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTACG  1321
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1259  TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTATG  1318

Query  1322  TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG  1381
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1319  TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG  1378

Query  1382  GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGGTGGTATGATTTTTGGAGGAACCG  1441
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1379  GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGCTGGTATGATTTTTGGAGGAACCG  1438

Query  1442  CTGTTCAAACCATGATCTTAAG-TTTTATCACAATGAGATGTGACTGGGAAAAAGAGGCG  1500
             |||||||||| ||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct  1439  CTGTTCAAACAATGATCTTA-GCTTTTATTACAATGAGATGTGATTGGGAAAAAGAGGCG  1497

Query  1501  CAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG  1560
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1498  CAGAAAGCAAGTGCTCGTGTTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG  1557

Query  1561  TTGAATCAACTATTAAATAATTTTGCAGCATAATATGGTTTTGGAAAACTGGTGTATGTT  1620
             |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct  1558  TTGAGTCAACTATTAAATAATTTTGCAGCATAATTTTGTTTTGGAAAACTGGTGTATGCT  1617

Query  1621  TTGTATCCAAATGTGATACAACATATTTAGAGCCGGTTCATAGATTACATA-GGA-TC-G  1677
             | ||||| ||||||||||||| || || |||||||||| |||||||| ||| ||  || |
Sbjct  1618  T-GTATCGAAATGTGATACAATATCTT-AGAGCCGGTTTATAGATTAAATATGGTCTCTG  1675

Query  1678  ----CTGCAATTACTGCAAAATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT  1733
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1676  TAAACTGCAATTACTGCAACATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT  1735

Query  1734  ATTATTAG  1741
             ||||||||
Sbjct  1736  ATTATTAG  1743



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67572094630


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5