BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65380.1 Length=1800 Score E Sequences producing significant alignments: (Bits) Value Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1 2750 0.0 > Ahg496771 jgi|Araly1|496771|fgenesh2_kg.8__2587__AT5G65380.1 Length=1743 Score = 2750 bits (1489), Expect = 0.0 Identities = 1664/1748 (95%), Gaps = 13/1748 (1%) Strand=Plus/Plus Query 2 tctctcgtcttcaccattcttctcacttcttcttttctccttatatttcatttcttcCAC 61 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1 TCTCTCGTCTTCACCATTCTTCTCACTGCTTCTTTTCTCCTTATATTTCATTTCGTCCAC 60 Query 62 ATAACTaaaaaaaaaaGGAATTAGCGATGAGGGGAGGTGATGGAGAAGAAGGATCGGAGT 121 |||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||| Sbjct 61 ATAACT--AAAAAAAAGGAATTAGCGATGAGAGGAAGTGGCGGAGAAGAAGGATCGGAGT 118 Query 122 CAAGAGTTGCACTGTTGAAAAGTCCTCACACGGCGGAGGAAGACGGTGAAGGATTGAAGG 181 | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 119 CGAGAGTTGCACTGTTGAAAAGTCCTCACACGGGGGAAGAAGACGGTGAAGGATTGAAGA 178 Query 182 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATAGTTGGTCCGGCCATATTCAGTC 241 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 179 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATCGTTGGTCCGGCCATATTCAGTC 238 Query 242 GAGTAACGACATATTCGATGCTTGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 301 || | |||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 239 GAATTACGACATATTCGATGCTTATCATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 298 Query 302 TTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 361 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TCGAACTCGCCGCCATCTCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 358 Query 362 TGCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCGAAGAAAT 421 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 359 TGCTTGGAATGGCGAGCGCGTTGGAAACGCTGTGTGGGCAAGCGTTTGGAGCGAAGAAAT 418 Query 422 ATCATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGCTGTGTCT 481 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 419 ATTATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGTTGTGTCT 478 Query 482 TGTTATTACCAACTTATATTTTCACTACTCCGGTTCTTAAATTTCTTGGTCAACCGGACG 541 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 479 TGTTATTACCAACTTATATTTTCACTACTCCAGTTCTCAAATTTCTTGGTCAACCGGACG 538 Query 542 ATATCGCTGAGCTGTCCGGTGTTGTCGCCATTTGGGTCATACCGCTTCATTTCGCCTTCA 601 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 539 ATATCGCTGAGCTTTCCGGTGTTGTCGCCATTTGGGTCATACCTCTTCATTTCGCCTTCA 598 Query 602 CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAGTGACTGCGT 661 |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 599 CTTTCTCTTTTCCCCTTCAACGTTTCCTCCAGTGCCAGCTCAAAAACCAAGTGACTGCGT 658 Query 662 ATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGC 721 |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | Sbjct 659 ATGCCGCAGCCGTTGCATTGGTAGTTCACATTTTAGTGTGTTGGTTGTTCGTGGACGGAC 718 Query 722 TTAAACTAGGAGTCGTGGGGACTGTAGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 781 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 719 TTAAACTAGGAGTCGTCGGGACTGTGGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 778 Query 782 TTATTCTGTTAGTTTACTCTACTTGTGGTGGTTGTCCGCTTACTTGGACCGGCTTATCCT 841 ||||||| || ||||||||||||||||| |||||||| ||||||||||||||| | |||| Sbjct 779 TTATTCTATTGGTTTACTCTACTTGTGGCGGTTGTCCACTTACTTGGACCGGCCTCTCCT 838 Query 842 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCAGGCGTCATGC 901 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 839 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCCGGCGTCATGC 898 Query 902 TCTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAAAATG 961 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 899 TTTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAGAATG 958 Query 962 CTCGAATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1021 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CTCGCATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1018 Query 1022 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTCCGTGTGGCGAACGAATTAGGAGCTGGTA 1081 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1019 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTTCGTGTGGCGAACGAATTAGGAGCTGGTA 1078 Query 1082 ATGGTAAAGGAGCAAGATTTGCGACGATTGTATCGGTAACACAATCGTTGATAATCGGAT 1141 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1079 ATGGCAAAGGAGCAAGATTTGCGACGATTGTATCAGTAACACAATCGTTGATAATCGGAT 1138 Query 1142 TGtttttttGGGTGCTAATAATGCTTCTCCATAACCAAATCGCATGGATCTTCTCTTCGA 1201 ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1139 TGTTTTTCGGGGTGCTAATAATGCTTCTCCATACCCAAATCGCATGGATCTTCTCTTCGA 1198 Query 1202 GTGTAGCCGTCTTAGACGCCGTCAATAAACTCTCACTTCTGCTAGCTTTCACCGTTCTTC 1261 |||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| Sbjct 1199 GTGTAGCCGTCTTAGACGCCGTTAATAAACTTTCACTTCTGTTAGCTTTCACCGTTCTTC 1258 Query 1262 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTACG 1321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1259 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTATG 1318 Query 1322 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1378 Query 1382 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGGTGGTATGATTTTTGGAGGAACCG 1441 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1379 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGCTGGTATGATTTTTGGAGGAACCG 1438 Query 1442 CTGTTCAAACCATGATCTTAAG-TTTTATCACAATGAGATGTGACTGGGAAAAAGAGGCG 1500 |||||||||| ||||||||| | |||||| |||||||||||||| ||||||||||||||| Sbjct 1439 CTGTTCAAACAATGATCTTA-GCTTTTATTACAATGAGATGTGATTGGGAAAAAGAGGCG 1497 Query 1501 CAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1560 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 CAGAAAGCAAGTGCTCGTGTTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1557 Query 1561 TTGAATCAACTATTAAATAATTTTGCAGCATAATATGGTTTTGGAAAACTGGTGTATGTT 1620 |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| | Sbjct 1558 TTGAGTCAACTATTAAATAATTTTGCAGCATAATTTTGTTTTGGAAAACTGGTGTATGCT 1617 Query 1621 TTGTATCCAAATGTGATACAACATATTTAGAGCCGGTTCATAGATTACATA-GGA-TC-G 1677 | ||||| ||||||||||||| || || |||||||||| |||||||| ||| || || | Sbjct 1618 T-GTATCGAAATGTGATACAATATCTT-AGAGCCGGTTTATAGATTAAATATGGTCTCTG 1675 Query 1678 ----CTGCAATTACTGCAAAATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1733 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1676 TAAACTGCAATTACTGCAACATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1735 Query 1734 ATTATTAG 1741 |||||||| Sbjct 1736 ATTATTAG 1743 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67572094630 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5