BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65480.1 Length=1199 Score E Sequences producing significant alignments: (Bits) Value Ahg951394 jgi|Araly1|951394|scaffold_803281.1 765 0.0 Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1 178 9e-44 > Ahg951394 jgi|Araly1|951394|scaffold_803281.1 Length=494 Score = 765 bits (414), Expect = 0.0 Identities = 475/502 (95%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 237 AAGGAAACATTAAAAAAGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT 296 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 AAGGAAACAGAAAAAAAGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT 63 Query 297 GGTAGTAACACTAAAGATAGAGAGAAGAAAGAGTCAAT-TCCTAAAGGATCTTCTTCACT 355 | ||||||||||||| |||||||||||||||||||| | |||||||||||||||| || Sbjct 64 -G--GTAACACTAAAGAGAGAGAGAAGAAAGAGTCAATGT-CTAAAGGATCTTCTTCGCT 119 Query 356 TAGTCCTTCACTGAAGAAGACTACTACTAGTAAGACTGGTTCTTCCTCTTCATCAGTgaa 415 |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| Sbjct 120 GAGTCCTTCACTGAAGAAGACTACTAC---TAAGACTGGCTCTTCCTCTTCATCGGTGAA 176 Query 416 gaagaccaagagaggatggattggaagaggaggatcaggatcaggaggggaagaggataa 475 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 177 GAAGACCAAGAGAGGATGGATTGGAAGAGGAGGATCAGGATCAGGA---GAAGAGGATAA 233 Query 476 gattgggaATGTGGTGTTTCCTGAACCTGATGATCCAGAGTGGTCAATTGGTTGGGTTGA 535 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 234 GATGGGGAATGTGGTGTTTCCTGAACCAGATGATCCAGAGTGGTCAATTGGTTGGGTTGA 293 Query 536 GCCACATGGACCAGGTTTTAAAGCTGAGGATGATGATTGTGGTGGCTTTGTGGTTTTGGT 595 |||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| Sbjct 294 GCCACATGGACCAGGTTTTAAAACTCAGGAGGATGATTGTGGTGGCTTTGTGGTTTTGGT 353 Query 596 TCCTCTTTACAAGAAAGT-TATGGATGGTTCAGGGAATCAGATTCCGAATGGCTTCTTCT 654 |||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||| Sbjct 354 TCCTCTTTACAAGAAAGTGT-TGGATGGTTCAGGGAATCAGATTCCAAATGGCTTCTTCT 412 Query 655 CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT 472 Query 715 AAATTGGAGATTGGGAAGAATA 736 ||| |||||||||||||||||| Sbjct 473 AAACTGGAGATTGGGAAGAATA 494 > Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1 Length=2150 Score = 178 bits (96), Expect = 9e-44 Identities = 111/117 (95%), Gaps = 5/117 (4%) Strand=Plus/Minus Query 1083 aaaaaaaaaaaTCTTTTTTCTTTTGTTCCTTTGTGGTTTGATGATGTGTAATAGTAGTAA 1142 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2150 AAAAAAAAAAATC-TTTTTCTTTTGTTCCTTTGTGGTTTGATGATGTGTAATAGTAGT-- 2094 Query 1143 TGTACATGTACATATGTTGTTTTCTTGAAATCACATGTCATGTGCTTACTTTCGACA 1199 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 2093 -GTACATGTACATATTTTGTTTTCTTGAA-TCACATGTCATGTGCTTACTTTCGACA 2039 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44756304558 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5