BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G65480.1

Length=1199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951394 jgi|Araly1|951394|scaffold_803281.1                        765    0.0  
  Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1         178    9e-44


> Ahg951394 jgi|Araly1|951394|scaffold_803281.1
Length=494

 Score =  765 bits (414),  Expect = 0.0
 Identities = 475/502 (95%), Gaps = 13/502 (3%)
 Strand=Plus/Plus

Query  237  AAGGAAACATTAAAAAAGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT  296
            |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4    AAGGAAACAGAAAAAAAGATGGCAGTCTCTTTTCCTCGTCTTCCGAGGTGGTTGTGTGGT  63

Query  297  GGTAGTAACACTAAAGATAGAGAGAAGAAAGAGTCAAT-TCCTAAAGGATCTTCTTCACT  355
             |  ||||||||||||| |||||||||||||||||||| | |||||||||||||||| ||
Sbjct  64   -G--GTAACACTAAAGAGAGAGAGAAGAAAGAGTCAATGT-CTAAAGGATCTTCTTCGCT  119

Query  356  TAGTCCTTCACTGAAGAAGACTACTACTAGTAAGACTGGTTCTTCCTCTTCATCAGTgaa  415
             ||||||||||||||||||||||||||   ||||||||| |||||||||||||| |||||
Sbjct  120  GAGTCCTTCACTGAAGAAGACTACTAC---TAAGACTGGCTCTTCCTCTTCATCGGTGAA  176

Query  416  gaagaccaagagaggatggattggaagaggaggatcaggatcaggaggggaagaggataa  475
            ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct  177  GAAGACCAAGAGAGGATGGATTGGAAGAGGAGGATCAGGATCAGGA---GAAGAGGATAA  233

Query  476  gattgggaATGTGGTGTTTCCTGAACCTGATGATCCAGAGTGGTCAATTGGTTGGGTTGA  535
            ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  234  GATGGGGAATGTGGTGTTTCCTGAACCAGATGATCCAGAGTGGTCAATTGGTTGGGTTGA  293

Query  536  GCCACATGGACCAGGTTTTAAAGCTGAGGATGATGATTGTGGTGGCTTTGTGGTTTTGGT  595
            |||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct  294  GCCACATGGACCAGGTTTTAAAACTCAGGAGGATGATTGTGGTGGCTTTGTGGTTTTGGT  353

Query  596  TCCTCTTTACAAGAAAGT-TATGGATGGTTCAGGGAATCAGATTCCGAATGGCTTCTTCT  654
            |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||
Sbjct  354  TCCTCTTTACAAGAAAGTGT-TGGATGGTTCAGGGAATCAGATTCCAAATGGCTTCTTCT  412

Query  655  CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT  714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  CTCCTGCTGCTCCTGATGGGAAGAACATGGAACAGTGGCTGTCGTCTATGGGGAAGCTAT  472

Query  715  AAATTGGAGATTGGGAAGAATA  736
            ||| ||||||||||||||||||
Sbjct  473  AAACTGGAGATTGGGAAGAATA  494


> Ahg496782 jgi|Araly1|496782|fgenesh2_kg.8__2598__AT5G65490.1
Length=2150

 Score =  178 bits (96),  Expect = 9e-44
 Identities = 111/117 (95%), Gaps = 5/117 (4%)
 Strand=Plus/Minus

Query  1083  aaaaaaaaaaaTCTTTTTTCTTTTGTTCCTTTGTGGTTTGATGATGTGTAATAGTAGTAA  1142
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  2150  AAAAAAAAAAATC-TTTTTCTTTTGTTCCTTTGTGGTTTGATGATGTGTAATAGTAGT--  2094

Query  1143  TGTACATGTACATATGTTGTTTTCTTGAAATCACATGTCATGTGCTTACTTTCGACA  1199
              |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct  2093  -GTACATGTACATATTTTGTTTTCTTGAA-TCACATGTCATGTGCTTACTTTCGACA  2039



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44756304558


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5