BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65690.1 Length=2176 Score E Sequences producing significant alignments: (Bits) Value Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1 3299 0.0 > Ahg496802 jgi|Araly1|496802|fgenesh2_kg.8__2618__AT5G65690.1 Length=2111 Score = 3299 bits (1786), Expect = 0.0 Identities = 1984/2079 (95%), Gaps = 15/2079 (1%) Strand=Plus/Plus Query 25 TTAGTAGAAATGGCGGGAAACGGAAACGAAAGTACCGGTGGAGACTTCAGTTTCTCGGCT 84 ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1 TTAGTGGAAATGGCGGGAAAGGGAAACGAAAATACCGGTGGAGACTTCAGTTTCTCGGCT 60 Query 85 GCGGCGGCCCGTGATGCGCTTCCGAGGATCACGACTGAGAAGGGCGGCAAATCTCCAGGG 144 || ||||| |||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 61 GCTGCGGCGCGTGATGCGCTTCCGAGGATCACGACAGAGAAGGGCGGCAAATCT--A--- 115 Query 145 CCGGCAGACGTCTGCCAGGATGACATCGCACCGCGGGTCAACTTTCAGACCATCGACGAG 204 ||||||| ||||| || |||| |||||||||||||||||||||||||||||||||| Sbjct 116 ----CAGACGTGTGCCACGACGACACCGCACCGCGGGTCAACTTTCAGACCATCGACGAG 171 Query 205 CTTCACAGTCTCCAGAAGAAACGATCTGCCCCTACCACTCCTCTTAGAGATGGCAGCGCC 264 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 172 CTTCACAGTCTCCAGAGGAAACGATCTGCCCCGACCACTCCTCTTAGAGATGGCAGCGCC 231 Query 265 AGCGGAGTCAGCGGAACTAGTGGTCCGACTACTCCTGTCTCCAGCGAGACCATGCTTCAA 324 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 232 AGCGGAGTCAGCGGAACTAGTGGTCCGACCACTCCGGTCTCCAGCGAGACCATGCTTCAA 291 Query 325 TCCGTCAGTGCATCGTTGGCTTCGTTGACGAGAGAGACAGGACCGAAGTTAATAAGAGGA 384 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 292 TCCGTCAGTGCATCGTTGGCTTCGTTGACGAGAGAGACGGGACCGAAGTTAATAAGAGGA 351 Query 385 GATCCGACTTCGGCAGCTAAAGTAGCACACGTGCCAGTGACTCCTACGTCACTTCCGGCT 444 ||||| || |||||||| ||||| |||||||||||||||||||||| |||||||||| || Sbjct 352 GATCCAACGTCGGCAGCGAAAGTGGCACACGTGCCAGTGACTCCTAGGTCACTTCCGACT 411 Query 445 GCTGACGTCAGCGACAGTGGCTTGAAGTTCACTCACATCCTTCACAACCTCTCTCCCGCC 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 412 GCTGACGTCAGCGACAGTGGCTTGAAGTTCACTCACATCCTTCACAACCTCTCTCCAGCC 471 Query 505 GAGTTGTACGAGCAAGCGATAAAGTTTGAGAAGGGATCGTTTGTGACATCGACCGGTGCG 564 |||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||| Sbjct 472 GAGTTGTACGAGCAGGCGATTAAGTATGAGAAAGGATCGTTTGTGACATCGACCGGTGCG 531 Query 565 TTGGCTACATTGTCTGGAGCCAAAACCGGTCGGTCTCCTAAAGACAAGCGTGTGGTTAAG 624 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 TTGGCTACATTGTCCGGAGCCAAAACCGGTCGGTCTCCTAAAGACAAGCGTGTGGTTAAG 591 Query 625 GATGATACCACTGAGGCCGAACTCTGGTGGGGAAAAGGATCACCAAACATTGAAATGGAT 684 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 592 GATGAGACCACTGAGGCCGAACTCTGGTGGGGGAAAGGATCACCAAACATTGAAATGGAT 651 Query 685 GAAAAAACTTTTTTGGTGAACCGAGAGAGAGCTGTTGATTACTTAAACTCCTTGGACAAG 744 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 652 GAGCAAACTTTTTTGGTGAACCGAGAGAGAGCTGTTGATTACTTAAACTCCTTGGACAAG 711 Query 745 GTGTTTGTGAATGATCAATACCTAAACTGGGATCCAGAGAACAAAATCAAAGTGAGAATT 804 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 712 GTGTTTGTGAATGATCAATACCTAAACTGGGATCCAGAGAACAGAATCAAAGTGAGAATT 771 Query 805 GTTTCAGCAAGAGCTTACCATTCACTATTCATGCACAACATGTGTATCCGTCCAACACCT 864 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 GTTTCAGCTAGAGCTTACCATTCACTATTCATGCACAACATGTGTATCCGTCCAACACCT 831 Query 865 GAGGAGTTAGAGAATTTCGGGACACCCGATTTCACGATTTACAACGCGGGGAAATTCCCG 924 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 832 GAGGAGTTAGAGAATTTCGGGACACCCGATTTCACGATTTATAACGCGGGGAAATTCCCG 891 Query 925 TGTAACCGTTTCACTCATTACATGACATCTTCGACGAGTGTGGACATAAACCTAGGAAGA 984 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 892 TGTAACCGTTTCACTCATTACATGACATCTTCCACAAGTGTGGACATAAACCTAGGAAGA 951 Query 985 AGAGAGATGGTGATTCTAGGTACCCAATATGCTGGAGAAATGAAGAAAGGACTCTTTGGT 1044 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 952 AGAGAGATGGTGATTCTAGGTACACAATATGCTGGAGAAATGAAGAAAGGACTCTTTGGT 1011 Query 1045 GTGATGCATTATTTGATGCCTAAGAGAAAGATTTTGTCTCTTCACTCTGGTTGTAACATG 1104 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1012 GTGATGCATTATTTGATGCCTAAGAGAAAGATTTTGTCACTTCACTCTGGTTGTAACATG 1071 Query 1105 GGCAAAGATGGAGATGTTGCTCTCTTTTTCGGACTCTCTGGTACCGGAAAGACTACGTTG 1164 || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 1072 GGAAAAGATGGAGATGTTGCTCTCTTTTTCGGACTTTCTGGAACCGGAAAGACTACATTG 1131 Query 1165 TCGACTGACCATAACCGGTATTTGATCGGAGATGATGAACATTGTTGGAGTGAGGCTGGA 1224 |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1132 TCGACTGATCATAACCGATATTTGATCGGAGATGATGAACATTGTTGGAGTGAGACTGGA 1191 Query 1225 GTTTCGAATATCGAAGGTGGTTGTTACGCGAAATGCATTGATTTGGCTAGGGACAAAGAG 1284 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1192 GTTTCGAATATCGAAGGTGGTTGTTACGCGAAATGCATTGATTTGGCAAGGGAGAAAGAG 1251 Query 1285 CCTGATATCTGGAACGCTATCAAGTTTGGAACCGTTTTGGAGAATGTTGTGTTTGATGAG 1344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 CCTGATATCTGGAACGCTATCAAGTTTGGAACCGTTTTGGAGAATGTTGTGTTTGATGAG 1311 Query 1345 CATACACGAGAAGTGGATTACACTGACAAATCAGTGACGGAGAACACACGTGCGGCTTAT 1404 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 1312 CATACACGAGAAGTGGATTACACAGACAAATCGGTGACGGAGAACACACGTGCAGCTTAT 1371 Query 1405 CCGATAGAGTACATTCCAAACTCGAAGATACCGTGCGTTGGACCACACCCGAAGAACGTG 1464 ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1372 CCGATTGAGTACATTCCGAACTCGAAGATTCCGTGCGTTGGACCACACCCGAAGAACGTG 1431 Query 1465 ATCCTATTGGCTTGTGACGCCTTCGGTGTGTTGCCGCCAATCAGCAAGCTCAATCTTGCT 1524 ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1432 ATCCTGTTGGCTTGTGACGCCTTTGGTGTGTTGCCACCAATCAGCAAGCTCAATCTTGCT 1491 Query 1525 CAGACTATGTACCATTTCATCAGTGGCTACACTGCTCTCGTTGCAGGAACAGAGGAAGGA 1584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1492 CAGACTATGTACCATTTCATCAGTGGCTACACTGCTCTCGTTGCAGGAACAGAGGAAGGA 1551 Query 1585 GTTAAGGAACCTCGAGCGACATTCTCAGCTTGTTTTGGTGCTGCTTTCATTATGCTACAC 1644 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| Sbjct 1552 GTTAAGGAACCTCGAGCAACATTCTCGGCTTGTTTCGGTGCTGCTTTCATTATGCTTCAC 1611 Query 1645 CCAACCAAGTACGCTGCTATGTTGGCTGAGAAAATGCAGGCTCAAGGAGCCACCGGTTGG 1704 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1612 CCAACCAAGTATGCTGCTATGTTGGCTGAGAAAATGCAGGCTCAAGGAGCCACCGGTTGG 1671 Query 1705 CTTGTTAACACCGGTTGGTCCGGTGGAAGCTACGGAACTGGAAGCCGAATCAAGTTGGCG 1764 ||||||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||| Sbjct 1672 CTTGTTAACACTGGATGGTCCGGTGGAAGCTATGGATCTGGAAGTAGAATCAAGTTGGCG 1731 Query 1765 TATACACGAAAGATAATCGATGCTATACATTCGGGTAGTCTAC-TGAATGCAAGTTACCG 1823 || ||||||||||| |||||||||||||||||||||||||| | |||||||| |||||| Sbjct 1732 TACACACGAAAGATTATCGATGCTATACATTCGGGTAGTCT-CTTGAATGCATCTTACCG 1790 Query 1824 TAAAACAGATATTTTTGGTTTGGAGATTCCAAATGAAGTAGAAGGAGTTCCTTCTGAGAT 1883 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1791 AAAAACAGATATTTTTGGTTTGGAAATTCCAAATGAAGTTGAAGGAGTTCCTTCTGAGAT 1850 Query 1884 ACTGGAACCTATTAATGCATGGCCTGATAAAATGGCTTATGAGGACACATTGTTGAAATT 1943 |||||||||||||||||| ||| || |||||||||||||||||||||||||||||| | Sbjct 1851 ACTGGAACCTATTAATGCCTGGGAAGACAAAATGGCTTATGAGGACACATTGTTGAAACT 1910 Query 1944 GGCTGGTTTGTTTAAAAGCAATTTTGAGACATTCACAAGTCATAAGATTGGTGATGATGG 2003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1911 GGCTGGTTTGTTTAAAAGCAATTTTGAGACATTCACAAGTCATAAGATTGGTGATGATGG 1970 Query 2004 AAAATTGACTGAAGAGATTCTTGCAGCTGGTCCTAACTTCTAAAGTGATTGAAGATGATG 2063 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1971 AAAATTGACTGAAGAGATTCTTGCAGCTGGTCCTAACTTCTAA-GTGATTGAAGATGATG 2029 Query 2064 ATGAAAAACAAACCTTTTTACT--AACCAAAATAAGACT 2100 ||||||||||||||||||| || ||||||||||||||| Sbjct 2030 ATGAAAAACAAACCTTTTT-CTCCAACCAAAATAAGACT 2067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81894026750 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5