BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65890.1
Length=1783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951445 jgi|Araly1|951445|scaffold_803332.1 2375 0.0
> Ahg951445 jgi|Araly1|951445|scaffold_803332.1
Length=1475
Score = 2375 bits (1286), Expect = 0.0
Identities = 1402/1460 (96%), Gaps = 0/1460 (0%)
Strand=Plus/Plus
Query 200 TTAAGATGATGGAAATAGCTTATCAGCCTCGGATTGATTCCGAGATTGAATCACTCGTCG 259
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 16 TTAAGATGATGGAAATAGCTTATCAGCCTCGGATTGATTCCGAGATCGAATCACTCGTCG 75
Query 260 AGAGAATCAATCCTCCAAGGGTTTGTGTAGACAACGACTCTGACCCAGAGTGCACACTTA 319
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 76 AGAGAATCAATCCTCCCAGGGTTTGTGTAGACAACGACTCAGACCCAGAGTGCACACTTA 135
Query 320 TTAAGGTAGATAGCGCGAACAAGTACGGGATATTACTGGACATGGTTCAAGTGTTAGCCG 379
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 136 TTAAGGTAGATAGCGCGAACAAGTACGGGATATTACTGGATATGGTTCAAGTGTTCGCCG 195
Query 380 ATCTTGATCTCGTTATCTCCAAATGTTACATCTCATCTGATGGCGAATGGTTCATGGATG 439
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 196 ATCTTGATCTCGTTATCTCCAAATGTTACATCTCATCTGATGGTGAATGGTTCATGGATG 255
Query 440 TGTTTCACGTGACAGACCAACTCGGGAATAAGCTCACCGACCGAAGCCTTATTCTCTACA 499
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 256 TGTTTCACGTGACAGACCAACTCGGAAACAAGCTCACAGACCGAAGCCTTATTCTCTACA 315
Query 500 TTCAACAGGCAATATGTTCTAGTAGAACGGGAGGTATAACAAAGGAGATGCAGAGTAATC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TTCAACAGGCAATATGTTCTAGTAGAACGGGAGGTATAACAAAGGAGATGCAGAGTAATC 375
Query 560 TAAAACGGGAGGTGCAACAGCGCCACGTGTCAACAGAACACACGGCCTTTGAGATAACCG 619
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 376 TAAAACGGGAGGTGCAACAGCGCCACGTTTCAACAGAGCACACGGCCTTTGAGATAACCG 435
Query 620 GAATCAATAGACCGGGTCTACTATCCGAAATATCTGCCGTACTTTCCGACATTGGATGTC 679
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 436 GAATCAACAGACCGGGTCTACTGTCCGAAATATCTGCCGTACTTTCCGACATTGGATGTC 495
Query 680 ACGTGACGGCTGCTGTTGCATGGACCCACCACGAGCGAGCGGCTATGGTGATTTATCTAG 739
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 496 ACGTGACGGCTGCAGTGGCATGGACCCACCACGAGCGAGCGGCGATGGTGATTTATCTAG 555
Query 740 AAGACGGGTTTAACGGTGGGCCCATTATCGACCCAATAAGAAAGGCCCAAGTAAAGGATC 799
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 556 AAGACGGGTTCAACGGTGGGCCTATAATCGACCCAATAAGAAAGGCCCAAGTAAAGGATC 615
Query 800 ATCTGGATACAGTCATGGAGGCCCATCACATAGTTGGCGATGTGTCTCATGTCGTCGTGA 859
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 616 ATCTTGATACAGTCATGGAGGCCCATCACAGAGTTGGCGATGTGTCTCATGTTGTCGTGA 675
Query 860 GGGTCGTCGAGGCTAAAGGAGTTCCGGTCGGGTGGGCTCACACTGAGCGACGACTTCACG 919
|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 676 GGGTTGTCGAGGCTAAAGGAGCTCCCGTCGGGTGGGCTCACACTGAGCGACGACTTCACG 735
Query 920 AGCTAATGTACGGAGAAGGAGATTACGAGAATTGCTTCGACTGCGATTGTTTCGGAGACA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AGCTAATGTACGGAGAAGGAGATTACGAGAATTGCTTCGACTGCGATTGTTTCGGAGACA 795
Query 980 GGTGCGATGCTTTGTGGAGAGGAAGATGCGAGAGGATACACGTGACAATCGAAGCATGTA 1039
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 796 GGTGCGATGCTTTGTGGAGAGGAAGATGCGAGAGGATACACGTGACGATCGAAGCATGTA 855
Query 1040 ATGGCTATTCAATGGTGAATGTTAAGTGTAGAGACAGACCAAAACTACTTTTCGACACGG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 ATGGCTATTCAATGGTGAATGTTAAGTGTAGAGACAGACCAAAACTACTTTTCGACACGG 915
Query 1100 TGTGTGCTTTGAAAGAGTTACAATTCGTTGTGTTTCACGCCGTCGCCGGAGCTAAAGGCT 1159
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 916 TGTGTGCATTGAAAGAGTTACAATTCGTAGTGTTTCACGCCGTCGCCGGAGCTAAAGGAT 975
Query 1160 CCACTGCAGAGCAAGAATATTTCATAAGAAAGAAGAACGGGGGCACGTTAGAAACGGAAG 1219
| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 976 CGACGGCGGAGCAAGAATATTTCATAAGAAAGAAGAACGGGTGCACGTTAGAAACGGAAG 1035
Query 1220 GGCAAAGAGAGAGACTAAGGCATTGTTTGGTTGCTGCGATTTCGAGACGTGCTTCACAAG 1279
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1036 TGCAAAGAGAAAGACTAAGGCATTGTTTGGTTGCTGCGATTTCGAGACGTGCTTCACGAG 1095
Query 1280 GATTGAAACTCGAGATTCGGACAGAGAACAAGATGGGTTTGTTGTCGGATGTGACTAGAG 1339
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1096 GTTTGAAACTCGAGATTCGGACTGAGAATAAGATGGGTTTGTTGTCGGATGTGACTAGAG 1155
Query 1340 TTGTGAGAGAAAACGGTTTATCGATAACGAGAGCTGAGATGTGCACGCAAGGTGAGATTG 1399
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 TCGTGAGAGAAAACGGTTTATCGATAACGAGAGCTGAGATGTGCACGCAAGGTGAGATTG 1215
Query 1400 CGGTTGGCTCGTTTTATGTTACGGATGTGAATGGTGGTGAGACGGGTCCTAGTGAGGTTG 1459
||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||
Sbjct 1216 CGGTTGGCTCGTTTTATGTCACGGATGTGAATGGTGGTGAGACGGATCCGAGTGCGGTTG 1275
Query 1460 AAGCGGTTGTACGAGAATTGGGAGGAGCGGTTGTGTCAGCGGTTAAAGGGGTTGGAATGA 1519
||||||||| ||||||||| || ||||||||||||||||||||||||| |||||| ||||
Sbjct 1276 AAGCGGTTGAACGAGAATTAGGTGGAGCGGTTGTGTCAGCGGTTAAAGCGGTTGGGATGA 1335
Query 1520 TGCCGAGGAGGATTGGTTCGACGAGTGATAGTGTGGAGCAGGACAAAGCTAAGTCGTCTA 1579
|||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1336 TGCCGAAGAGGATGGGTTCAACGAGTGATAGTGTGGAGCAAGACAAAGCTAAGTCGTCGA 1395
Query 1580 TTGGGAGAATGTTTTGGTCTAAATTAGAGAGGTTGTCAACGTCTATAAGATCGTTGTGAA 1639
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1396 TTGGGAGATTGTTTTGGTCTAAATTAGAGAGATTGTCAACGTCTATAAGATCGTTGTGAA 1455
Query 1640 GTGTTTGATTAGTGGTTTTT 1659
|||||||||||| || ||||
Sbjct 1456 GTGTTTGATTAGAGGATTTT 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66924560465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5