BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G65960.1 Length=1497 Score E Sequences producing significant alignments: (Bits) Value Ahg951652 jgi|Araly1|951652|scaffold_803539.1 1975 0.0 > Ahg951652 jgi|Araly1|951652|scaffold_803539.1 Length=1227 Score = 1975 bits (1069), Expect = 0.0 Identities = 1178/1230 (96%), Gaps = 9/1230 (1%) Strand=Plus/Plus Query 46 GGCGAAGTTGGAGAAGATTGATGGAAAGCCGACCGGGAGTTTTGGTCGTCGGATCCTCTG 105 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 GGCGAAGTTGGAGGAGATTGATGGAAAGCCGGCCGGGAGTTTTGGTCGTCGGATCCTCTG 60 Query 106 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 120 Query 166 AGTCATCATCTCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 225 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGTCACCATCGCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 180 Query 226 ATGTTTCTGTATGTATATCACATATTTGCGATGAATACTCTCTACCCAATCTCCCTAACT 285 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 181 ATGTTTCTGTATGTATATCACATATTTGCGATGACTACTCTCTACCCAATCTCCCTCACT 240 Query 286 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACCCTTGTTG 345 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACTCTTGTTG 300 Query 346 CTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTG 405 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 301 CTCTTCAAGACTGGGTTTCTCATACCGACATCAACAATTTTGATATATTGTTGTGCATTG 360 Query 406 GTAACAAAGTAGATCGTGTCCCTCATCACCTTGCTCATGATGAATATAGACGGCGCCTTT 465 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 361 GTAACAAAGTAGATCGTGTCCCTCATCACCTAGCTCATGATGAATATAGACGACGCCTTT 420 Query 466 TGAAGGCATCAGACCCCTCTAGAGA-TCTGTATTCGGACATTGATGACTTTGGGATCTCC 524 |||||||| |||||||||||||| | | ||||||| |||||||||||||||||||||||| Sbjct 421 TGAAGGCAACAGACCCCTCTAGA-ATTATGTATTCAGACATTGATGACTTTGGGATCTCC 479 Query 525 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTGAAGATGCATCACTAGATATCAGGGGAGCA 584 |||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 480 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTCAAGATACATCACTGGATATCAGGGGAGCA 539 Query 585 TGTCTTGAGTGGTGCTCTGAGAATAACATTGAGTTCATTGAGGCTTGTGCCTCTAATCCT 644 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 540 TGTCTTGAGTGGTGCTCTGAGAATAACATCGAGTTCATTGAGGCTTGTGCCTCTAATCCT 599 Query 645 GATTTTGACAAGTGTTTATCAGTCGATGGGGATTCTCAAGGGGTTGAACGTCTATTTGGT 704 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 600 GATTTTGACAAGTGTTTGTCAGTCGATGGGGATTCTCAAGGGGTTGAACGCCTATTTGGT 659 Query 705 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAA 764 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 660 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCGGGTGATAAGATAAATGAT 719 Query 765 CCTGTGTTACCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 824 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CCGGTGTTAGCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 779 Query 825 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGATAATATTGAAGAAAGATGGGTTTCT 884 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 780 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGAAAATATGGACGAAAGATGGGTTTCT 839 Query 885 GCAAGTGAAACGCATTCACATGCCGATGCTGGCGGATCCACTTCACAGGAAAACCTCCAT 944 |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| Sbjct 840 GCAAGTGAAACGCATTCACATGGAGATGCTGGCGGTTCCACGTCACAGGAAAACCTCCAT 899 Query 945 GTAGAAAATAGTATGGTGAAACCGAATAAAG-T-T-GATGAAGAGCTGCTGCCGTCAGGG 1001 |||||||||| |||||||||| ||||||||| | | ||||||||||||| |||||||||| Sbjct 900 GTAGAAAATAATATGGTGAAATCGAATAAAGTTGTGGATGAAGAGCTGCGGCCGTCAGGG 959 Query 1002 TCA-AGGTTAGAGCTGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAAACCTTT 1060 ||| | |||||||| |||||||||||||||||||||||||||||||||||||| | |||| Sbjct 960 TCACA-GTTAGAGCCGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAGATCTTT 1018 Query 1061 GGGCACAGAAAATGAAAAATGTTACGAGTTTGAAGATGTGGAACAGTTGATGTCAGAAAT 1120 || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1019 GGACACAGAAAATGAAAAATGTTATGAGTTTGAAGACGTGGAACAGTTGATGTCAGAAAT 1078 Query 1121 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1138 Query 1181 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACACTGATGACGAGGAAGAACC 1240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1139 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACAGTGATGACGAGGAAGAACC 1198 Query 1241 TGAGTGAGTCTGTTTATATCAGAT-ATTGT 1269 ||||||||| ||||||||||| || ||||| Sbjct 1199 TGAGTGAGTGTGTTTATATCA-ATTATTGT 1227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56030750395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5