BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65970.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497027 jgi|Araly1|497027|fgenesh2_kg.8__2843__AT5G65970.1 2892 0.0
> Ahg497027 jgi|Araly1|497027|fgenesh2_kg.8__2843__AT5G65970.1
Length=1782
Score = 2892 bits (1566), Expect = 0.0
Identities = 1714/1786 (96%), Gaps = 7/1786 (0%)
Strand=Plus/Plus
Query 6 ACGTAATCAAGGACCAAGGGATTTTCTTCTTTTGGCTACCATGGCCACAAGATGCTTTTG 65
||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 1 ACGTAATCAAGGACCAAGGGATTTTATTC-TTTGGCTGCCATGGCCACAAGATGCTTTTG 59
Query 66 GTGTTGGACCACTTTGCTCTTCTGCTCTCAGCTGCTTACCGGCTTTGCCCGAGCTTCCTC 125
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 60 GTGTTGGACCACTTTGCTCTTCTTCTCTCAGCTGCTTACCGGCTGCGCCCGAGCTTCCTC 119
Query 126 TGCAGGCGGC-GCCAAAGAGAAAGGACTCTCCCAAACTCCCACCTGGGCCGTTGCCCTCG 184
||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGCGGGC-GCTGGCAAAGAGAAAGGACTCTCCCAAACTCCCACCTGGGCCGTTGCCCTCG 178
Query 185 TCTGTACCTTCTTCATTCTTGTCTCCGTCCTCCTCGAGAAGGCTCTTCACAGAGTTGCCA 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCTGTACCTTCTTCATCCTTGTCTCCGTCCTCCTCGAGAAGGCTCTTCACAGAGTTGCCA 238
Query 245 CGTGGTTGTGGGAGAAACATAAGAACTCTCTGCTTGAAGCCTTGGAGAAAATAAAGGCGG 304
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 239 CGTGGTTGTGGGAGAAACATAAGAACTCTCTGCTTGAAGCCTTGGAAAAAATAAAGGCCG 298
Query 305 AGCTGATGATTCTAGGATTCATTTCCTTGTTGCTCACCTTCGGAGAGCAGTACATTCTCA 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 299 AGCTGATGATTCTAGGATTCATTTCATTGTTGCTCACCTTCGGAGAGCAGTACATTCTCA 358
Query 365 AGATTTGTATTCCTGAAAAGGCTGCAGCCTCTATGTTACCTTGTCCAGCTCCTTCTACTC 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGATTTGTATTCCTGAAAAGGCTGCAGCCTCTATGTTACCTTGTCCAGCTCCTTCTACTC 418
Query 425 ATGACCAAGACAAGACCCACCGCAGACGTCTAGCTGCTGCTACGACCTCTTCCCGCTGCG 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 ATGACCAAGACAAGACCCACCGCAGACGTCTAGCTGCTGCTACTACCTCTTCCCGCTGCG 478
Query 485 ATGAGGGTCATGAACCACTCATACCTGCCACGGGTTTGCACCAGCTACACATTCTATTGT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGAGGGTCATGAACCACTCATACCTGCCACGGGTTTGCACCAGCTACACATTCTATTGT 538
Query 545 TCTTCATGGCTGCCTTTCATATCCTCTACAGTTTCATCACCATGATGCTTGGCAGACTCA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTTCATGGCTGCCTTTCATATCCTCTACAGTTTCATCACCATGATGCTTGGCAGACTCA 598
Query 605 AGATCCGTGGCTGGAAAAAGTGGGAGCAGGAGACATGTTCTCATGATTACGAGTTTTCAA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGATCCGTGGCTGGAAAAAGTGGGAGCAGGAGACATGTTCTCATGATTACGAGTTTTCAA 658
Query 665 TCGATCCATCAAGATTCAGACTCACTCATGAGACGTCCTTTGTTAGACAACATTCCAGTT 724
||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 659 TCGATCCATCAAGATTCAGGCTCACTCATGAGACGTCCTTCGTCAGACAACATTCCAGTT 718
Query 725 TCTGGACAAAAATCCCCTTCTTCTTTTATGCTGGGTGCTTCCTACAGCAGTTTTTCCGAT 784
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 719 TCTGGACAAAAATCCCCTTCTTCTTTTATGCTGTGTGCTTCCTACAGCAGTTTTTCCGAT 778
Query 785 CTGTAGGGAGGACTGACTACTTAACTCTGCGCCATGGCTTCATCGCTGCCCATTTAGCTC 844
|||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 CTGTCGGGAAGACCGACTACTTAACTCTGCGCCATGGCTTCATCGATGCCCATTTAGCTC 838
Query 845 CAGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCATTGGAAGACGATTTCAAGG 904
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 839 CGGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCTTTGGAAGACGATTTCAAGG 898
Query 905 TGGTAGTTGGAATAAGTCCTCTTTTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATG 964
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGTAGTTGGAATAAGTCCTCTTCTGTGGGCATCATTTGTAATTTTCCTACTTCTGAATG 958
Query 965 TTAATGGCTGGGAAGCATTGTTTTGGGCGTCAATCCTACCTGTACTTATCATTCTAGCTG 1024
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 959 TTAATGGCTGGGAAACATTGTTTTGGGCGTCAATCCTGCCTGTACTTATTATTTTAGCTG 1018
Query 1025 TCAGTACGAAGCTTCAAGCGATCCTAACAAGAATGGCTCTGGGAATCACGGAGAGACACG 1084
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 TCAGTACGAAGCTTCAAGCTATCCTAACAAGAATGGCTCTGGGAATCACAGAGAGACACG 1078
Query 1085 CAGTTGTTCAAGGGATACCTCTCGTGCATGGTTCAGATAAGTACTTTTGGTTTAATCGCC 1144
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGTTGTTCAAGGGATACCTCTTGTGCATGGTTCAGATAAGTACTTTTGGTTTAATCGCC 1138
Query 1145 CTCAGTTGCTACTTCATCTTCTTCACTTCGCCTTATTTCAGAATGCTTTCCAGCTAACAT 1204
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CTCAGTTGCTGCTTCATCTTCTTCACTTCGCCTTATTTCAGAATGCTTTCCAGCTAACAT 1198
Query 1205 ACTTCTTCTGGGTCTGGTATTCCTTTGGGCTAAAATCTTGCTTTCACACGGATTTCAAAC 1264
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1199 ACTTCTTCTGGGTCTGGTATTCCTTTGGGCTAAAATCTTGTTTTCATACGGATTTCAAAC 1258
Query 1265 TAGTCATCGTAAAACTCTCTCTAGGCGTTGGAGCTTTGATTTTGTGCAGCTACATCACAC 1324
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 TTGTCATCGTAAAACTATCTCTAGGCGTTGGAGCTTTGATTTTGTGCAGCTACATCACGC 1318
Query 1325 TTCCTTTGTATGCACTAGTTACTCAGATGGGTTCAAACATGAAGAAAGCTGTGTTTGATG 1384
||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 1319 TTCCTTTGTATCCACTAGTTACCCAGATGGGCTCACACATGAAGAAAGCTGTGTTTGATG 1378
Query 1385 AGCAAATGGCAAAAGCGTTGAAGAAATGGCACATGACTGTGAAGAAGAAGAAAGGCAAAG 1444
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 AGCAAATGGCAAAAGCGTTGAAGAAATGGCACATGACTGCAAAGAAGAAGAAAGGCAAAG 1438
Query 1445 CGAGAAAGCCACCAACAGAGACCCTTGGTGTTTCTGACACTGTCAGCACCTCTACCTCAT 1504
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1439 CGAGAAAGCCACCAACAGAGACCCTTGGTGGTTCTGACAGTGTCAGCACCTCTACCTCAG 1498
Query 1505 CCTTTCACGCCTCTGGAGCCACTCTACTCCGCTCCAAGACCACTGGTCACTCGACAGCCT 1564
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1499 CATTTCACGCCTCTGGAGCCACTCTACTACGCTCCAAGACCACCGGTCACTCGACAGCCT 1558
Query 1565 CTTATATGAGTAA-TTTCGAGGACCAAAGCATGTCTGATCTTGAAGCTGAGCCATTATCC 1623
|||| |||||||| ||| ||||||||||| |||||||||||||| ||||||| |||| |
Sbjct 1559 CTTACATGAGTAACTTT-GAGGACCAAAGTATGTCTGATCTTGAGGCTGAGCGATTAACT 1617
Query 1624 CCTGAACCAATAGAGGGGCACACTCTCGTCAGGGTTGGTGATCAGAACACAGAGATAGAA 1683
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 1618 CCTGTGCCAATAGAGGGGCACACTATCGTCAGGGTTGGTGATCAGCCCACAGAGATGGAA 1677
Query 1684 TATACTGGAGATATTAGTCCTGGAAACCAATTCTCCTTTGTGAAGAAC-GTTCCTGCTAA 1742
|||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1678 TATACTGGAGTTATTAGTCCTGGAAACCAATTCTCCTTTGTGAAGC-CTGTTCCTGCTAA 1736
Query 1743 TGATATTGACTAATATTCAAAATGAATGCAGAACAAATCCATCATC 1788
||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 1737 TGATATTGATTAGTGTTCAAAATGAATGCAGAACAAATCCATCATC 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5