BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G65990.1
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497022 jgi|Araly1|497022|fgenesh2_kg.8__2838__AT5G65990.1 2464 0.0
> Ahg497022 jgi|Araly1|497022|fgenesh2_kg.8__2838__AT5G65990.1
Length=1545
Score = 2464 bits (1334), Expect = 0.0
Identities = 1481/1550 (96%), Gaps = 18/1550 (1%)
Strand=Plus/Plus
Query 9 GAGATCGATCGCCATTAACGTAGACTGTGACTCTCGGCTCTTCTTCACTCTCAATTTCG- 67
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1 GAGATCGATCGCCATTAACGTCGACTGTGACTCTCGGTTCTTCTTCACTCTCAATTTCGA 60
Query 68 --A--TCG---GCATGAGGTACGATCAGGAAGCGGGATCGTCCTCCCAT-TCGCTGCCTT 119
| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 TTATCTCGTCAGCATGAGGTACGATCAGGAAGCGGGATCGTCCTCCC-TGTCGCTGCCTT 119
Query 120 CGGGATCATCCTCCCATTCGCTGCCGCCGACGGAAGACACTCCTCTTTTGGGGCCTCGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGGGATCATCCTCCCATTCGCTGCCGCCGACGGAAGACACTCCTCTTTTGGGGCCTCGAA 179
Query 180 CATTGTCGTCGCAGCCAAAAACCTTTGCAAATGTCTTCATCGCCATCGTCGGCGCCGGCG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATTGTCGTCGCACCCAAAAACCTTTGCAAATGTCTTCATCGCCATCGTCGGCGCCGGCG 239
Query 240 TGCTCGGACTTCCGTACACCTTCAAGAAGACTGGATGGCTCTTGGGCCTCCTCACACTCC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 TGCTCGGACTTCCGTACACCTTCAAGAAGACTGGATGGCTCTTGGGCCTCCTCACTCTCC 299
Query 300 TCTTCGTATCCTCCCTCACCTTCTTCTGTATGATGCTCCTCGTCCACACCCGCCGGAAAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTCGTATCCTCCCTCACCTTCTTCTGTATGATGCTCCTCGTCCACACCCGCCGGAAAC 359
Query 360 TCGAGTCCCTCTCCGGCTTCAACAGCATCACTTCTTTCGGAGATCTCGGCGAATCCGTCT 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 360 TCGAGTCCCTCTCCGGCTTCAACAGCATCACTTCTTTCGGAGACCTCGGCGAATCTGTCT 419
Query 420 GCGGCCCTGCCGGTCGTCTCGTCGTCGATGTTATGCTTGTCCTTTCCCAATCTGGCTTCT 479
|||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 420 GCGGACCTGCCGGCCGTCTCGTCGTAGATGTAATGCTTGTCCTTTCCCAATCTGGCTTCT 479
Query 480 GCGTCAGTTACCTTATCTTCGTCGCCACCACAATGGCTAATCTCCTCAGCCGCGGCACCG 539
||||||| || || |||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 480 GCGTCAGCTATCTAATCTTCGTCGCCACCACAATGGCTAATCTCCTCAACCGCAGCACCG 539
Query 540 AACATATTCTAGGCCTCGATGCTGCTTCCATTTACCTCTGGGGATGTTTCCCCTTTCAGC 599
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 540 AACATATTCTAGGCCTCGATCCTGCTTCGATTTACCTCTGGGGATGTTTCCCCTTTCAGC 599
Query 600 TGGGTCTCAACTCCATCCCATCGCTCACCCATCTCGCCCCTTTGAGTATATTCGCCGATA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGGGTCTCAACTCCATCCCATCGCTCACCCATCTCGCCCCTTTGAGTATATTCGCCGATA 659
Query 660 TCGTGGACGTAGCCGCCACCTTAGTGGTTATGGTGCAGGATGTTTTCATCTTCCTGAAAC 719
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCGTGGACGTAGCGGCCACCATAGTGGTTATGGTGCAGGATGTTTTCATCTTCCTGAAAC 719
Query 720 GAAGACCTCCTTTGAGAGTCTTTGGAGGTGTCTCTGTTTTCTTCTACGGATTGGGAGTTG 779
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGACCTCCCTTGAGAGTCTTTGGAGGTGTCTCTGTTTTCTTCTACGGATTGGGAGTTG 779
Query 780 CGGTGTACGCATTTGAAGGGATCGGAATGGTTCTGCCACTGGAACTAGAGGCTAAATACA 839
| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 780 CTGTGTACGCATTTGAAGGGATCGGAATGGTTTTGCCACTGGAACTAGAGGCCAAATACA 839
Query 840 AAGACAAGTTCGGTAGAGCGCTGGGGCTAGCCATGGGCTTAATCTCGATCATGTACGGTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGACAAGTTCGGTAGAGCGCTGGGGCTAGCCATGGGCTTAATCTCGATCATGTACGGTG 899
Query 900 CGTTCGGGCTGCTAGGGTACATGGCTTACGGAGAGGAGACGAAAGACATCATCACCACCA 959
||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 900 CGTTCGGCCTGCTAGGGTACATGGCTTACGGAGAGGAGACGAGAGACATTATCACCACCA 959
Query 960 ACCTGGGGACAGGAGTGGTGAGCACTCTGGTGCAGCTGGGCTTAGCAATCAACCTCTTCT 1019
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 ACCTGGGGGCAGGAGTGGTGAGCACTCTGGTGCAGCTGGGCCTAGCAATCAACCTCTTCT 1019
Query 1020 TCACATTCCCCCTTATGATGCAACCTGTCTACGAGGTCGTGGAACGCCGCCTTTGCAGCT 1079
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1020 TCACATTCCCCCTTATGATGCACCCCGTCTACGAGGTCGTGGAACGCCGCCTTTGCAGCT 1079
Query 1080 CCCGTTACTCTGTATGGGTGCGCTGGGCCACTGTGCTGGTGGTCACGCTCGTGGCCCTGC 1139
|||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 CCCGCTACTCCATATGGGTGCGCTGGGCCACTGTGCTGGTGGTCACTCTCGTGGCCCTGC 1139
Query 1140 TCGTCCCAAATTTTGCAGACTTCTTATCTCTGGTGGGGAGCAGCGTCTGCGTGGTGCTGG 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TCGTCCCTAATTTTGCAGACTTCTTATCTCTGGTGGGGAGCAGCGTCTGCGTGGTGCTGG 1199
Query 1200 GCTTTGTCTTGCCATCACTATTTCACTTGCAGGCTTTCAAAAACGAGTTGAGCATCACAA 1259
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1200 GCTTTGTCTTGCCATCACTTTTTCACTTGCAGGCTTTCAAAAACGAGCTGAGCATCACAA 1259
Query 1260 GAATAGTGGTAGACGTTCTCGTTTTCCTCATTGGTGTTATGATAGCCATTACCGGGACCT 1319
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1260 GAATAGTGGTAGACGTTCTCGTTTTCCTCATTGGTGTTATTATAGCCATTACCGGGACTT 1319
Query 1320 GGACTGCAGTACATGAGATCCTGACATCCAAGGCCTGA--GCT-T-CTTCCATTGTTTAT 1375
|||| || ||||| ||||||||| |||||||||||||| | | | ||||||||||||||
Sbjct 1320 GGACGGCCGTACACGAGATCCTGTCATCCAAGGCCTGATTGATATTCTTCCATTGTTTAT 1379
Query 1376 TTTTGTCAGTATGAAAAGAGAAGCATTGTTACCTCCAGCGAACACGGCATTATTATTGTT 1435
|||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct 1380 TTTTGTCAGTATGAAAAGAGAAGCATAGTTACCTACAGCGAACACGGCAGCATTATTGTT 1439
Query 1436 ATTCTGTTACTCTCCTCACTTGTTTATTTGAGTCTTATTACTCTATTTGTAAGAAAGACG 1495
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1440 ATTCTGTTACTCTCCTCACTTGTTTATTTGTGTCTTATTACTCTATTTGTAAGAAAGAC- 1498
Query 1496 CACCATGGAAAACCAATAAGAAAAATACTCTTAGAATCAAGTTTGATAAA 1545
| | ||| |||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1499 C-C-ATG-AAAACCAATAAGAAAAATACGCTTAGAATCAAGTGTGATAAA 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5