BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66005.3
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332964 jgi|Araly1|332964|fgenesh1_pm.C_scaffold_8002307 902 0.0
> Ahg332964 jgi|Araly1|332964|fgenesh1_pm.C_scaffold_8002307
Length=579
Score = 902 bits (488), Expect = 0.0
Identities = 549/579 (95%), Gaps = 2/579 (0%)
Strand=Plus/Plus
Query 152 ATGGCAGGCACCGGGAAATGCCTTCTTGTCACCGGCCCTCCTGGTGTCGGAAAAACCACA 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGCACCGGGAAATGCCTTCTTGTCACCGGCCCTCCTGGTGTCGGAAAAACCACA 60
Query 212 TTGATCATGAGAGTGTTGGATATGATGAGGGTTTCCAACCCTAACTTAAAAATCCAGGGT 271
||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 61 TTGATCATGAGAGTGTTCGACATGATTAGGGTTTCCAACCCTAACTTAAAGATCCAAGGT 120
Query 272 TTCTACACTCAAGAGATGAGGGAACGAGGACAAAGGGTTGGTTTTCAAGTGGTCACTTTG 331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCTACACTCAAGAGATGAGGGAACGAGGACAAAGGGTTGGTTTTCAAGTGGTCACCTTG 180
Query 332 GATGGCCGCACAAGTTTGCTTGCTTCTTCTATTGTTTCTAGTCAAGAATCGATGACATGG 391
||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct 181 GATGGCCGCACAAGTTTGCTTGCTTCTTCCACTGTTTCTAGTCAAGAATCAATGACATGG 240
Query 392 CCTAGTGTTGGCAAGTACAAAGTGGACATTGCATCCTTCGAGTCTATAGCCTTGCCTGAG 451
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 CCTAATGTTGGCAAGTACAAAGTGGACATTGCATCCTTCGAGTCTATAGCATTGCCTGAG 300
Query 452 CTACAGGTCAAAGACGATACCAATCTTTTCATCATTGATGAAGTTGGCAAGATGGAGATG 511
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAGGTCAAAGACGATACCCATCTTTTCATCATTGATGAAGTTGGCAAGATGGAGATG 360
Query 512 TTTAGTCCATCCTTTTTTCCGGCTGTCCTCAATGTTTTGGACTCCAACGTTCCTCTTCTT 571
|||||||||||||| |||||||||| |||||| ||||||| |||||| |||||||||||
Sbjct 361 TTTAGTCCATCCTTCTTTCCGGCTGCCCTCAAGGTTTTGGGGTCCAACATTCCTCTTCTT 420
Query 572 GCTTCCATTCCTAGCCCAAAATTTGGTCGACATCTTCCTGAAGTGGCAAGGTTGAAGAAC 631
|||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 421 ACTTCCATTCCTATCCCAAAATTTGGTCGAGATCTTCCTGGAGTGGCAAGGTTGAAGAAC 480
Query 632 CAACCGGGAGTGAATGTAATCTCCCTGAGTGCGACTAACAGAGA-TCCCATGAAAGAACA 690
||||||||||||| ||||||| ||||||||| || ||||||||| ||| |||||||||||
Sbjct 481 CAACCGGGAGTGACTGTAATCACCCTGAGTGAGAGTAACAGAGACTCC-ATGAAAGAACA 539
Query 691 TATCTTTGATGTTTTCTCTGGTTGGCTGCCCAAGCAATA 729
||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TATCTTTGATGTTTTCTCTGGATGGCTGCCCAAGCAATA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34196256549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5