BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66100.1 Length=1746 Score E Sequences producing significant alignments: (Bits) Value Ahg497006 jgi|Araly1|497006|fgenesh2_kg.8__2822__AT5G66100.1 1738 0.0 > Ahg497006 jgi|Araly1|497006|fgenesh2_kg.8__2822__AT5G66100.1 Length=1529 Score = 1738 bits (941), Expect = 0.0 Identities = 1403/1606 (87%), Gaps = 111/1606 (7%) Strand=Plus/Plus Query 132 ctctctctTCCTCTGTTACATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 191 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCTCTCTTCCTCTGTTACAGGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 60 Query 192 TCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTT 251 |||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| Sbjct 61 TCGCTTCTCCATTGATTCCTCTTTGTCGCGATCAAGTCACAGCGATTCCTCTCCCTGGTT 120 Query 252 GTTACCT--T-CTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTT 308 | | ||| | |||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 121 GATGCCTGCTGCTGATTCCCATGATGATCCGGCTCCTTCCCTCTCCCAGGACGA------ 174 Query 309 CTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGA 368 | | ||||| | | ||||||||| | |||||||||||||||||||||| Sbjct 175 -T---C-CCTTC--T-T-------AACCGGAAATGGCACTTCCGACTACGACAATGCTGA 219 Query 369 TAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCC 428 | ||||| |||||||||||||||||||||||||||||||||||| || | | Sbjct 220 TCAGAAG---CCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCC-CC-----C-G--A 267 Query 429 TGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCAT 488 ||||||||||||||||||||||||||||| ||| ||| | | |||||||||| Sbjct 268 TGTCATGGGCGCCGCCGAATCCTGGCCTG------CTC-TTC-G---G-TCTTCTTCCAA 315 Query 489 CAAGTCTCCCTCTTTGGATGCTTCCAAACCTTT-TCCTGATGG---------ATCATCGT 538 ||||||||||||||| ||| ||||||||||||| | ||||||| |||||| | Sbjct 316 CAAGTCTCCCTCTTTCGATTCTTCCAAACCTTTAT-CTGATGGATCATCATCATCATCAT 374 Query 539 CATCA--AT-----A--CCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATG 589 ||||| || | ||||||||||||||| | ||| || ||||||||||| Sbjct 375 CATCATCATCACCAATGCCGCCTCCCCAGGCT-GGTGGAACTCC--TTTCAATGCCAATG 431 Query 590 CAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGA 649 | ||||| |||||| ||||||||||||||||||||| | |||| |||||||||| ||||| Sbjct 432 CTGGCTCAAGTGTTGCTGCTACCTCATCTGAAAACAATACTGTGAATAATAGCCCGAGGA 491 Query 650 AACCTTTTAGACGGAATAACAACACATCATCTTCCAGTA--C-CAGTAGT--AA-CGTCT 703 ||||||||||||||||||||||| ||||||||||||||| | || | | || | | Sbjct 492 AACCTTTTAGACGGAATAACAACGCATCATCTTCCAGTAGTCACA-T-CTCCAACCCAC- 548 Query 704 CCAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGC-CAAAGGGGTGGTGGCTCT 762 ||| |||||||||||| |||||||||||||||| ||||| | |||||||||||| ||| Sbjct 549 CCAGTGCTGCGCCTTTTAACACCAGAGATCAGACTCACA-CTCAAAGGGGTGGT---TCT 604 Query 763 TTTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGT 822 | ||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 605 TATGGCTCAGGGAATTTCCGTAATTCCCAGAGGAATCGCAACAACAGCTCTTACCCTCGT 664 Query 823 GGGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTT 882 ||||||||||||||||||||||||||||||||||||||| | | | | || ||| Sbjct 665 GGGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAG-A--G----C---G-GG-TTT 712 Query 883 TCTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATG 942 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 713 TCTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTATTGGGATG 772 Query 943 ATTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATG 1002 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 773 ATGAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATG 832 Query 1003 GCAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCAT 1062 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 833 GCAGCGCCTCAATTAGGTTCATATGGTGGCCCCATGATCTACCCAGATTATGCACAGCAT 892 Query 1063 GTCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAA 1122 ||||||||||||| | || | ||| || |||| |||||||||||||||||||| || Sbjct 893 GTCTTTATGCCAC--C--TC-C-AGACCCCATGGCTTTAGTTGGACCCTTCCCACCTCTG 946 Query 1123 CCCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAA 1182 ||| ||||||||| || || ||||||||| |||||||||||||||||||||||||||||| Sbjct 947 CCCGTGTATTTTCCCAGTTATGATGCCATGTTGTACAATAAGATATTGACACAAGTAGAA 1006 Query 1183 TATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGAT 1242 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1007 TATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACACTTGCGGGATCAGATGAATGAT 1066 Query 1243 GAAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAAT 1302 ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| Sbjct 1067 GAAGGTTGGGTTCCTGTAAGAGTAATAGCAGGGTTCAGGAGACTTGCAGAACTGACCAAC 1126 Query 1303 AACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAA 1362 |||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||||| Sbjct 1127 AACATCCACACTATATTGGAAGCACTAAAAAGTTCAGAAGTCGTGGAAATTAAGGGTGAA 1186 Query 1363 ACATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCC 1422 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1187 ACATTGAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAAGTTC 1246 Query 1423 GGTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTgagagcatgact 1482 |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 1247 GGTCCAGCAGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAACTTGAGAGCATGGCT 1306 Query 1483 ctatcagagaggagcagagagggagtgtaagagagatgctactaagagagagaaagaaag 1542 ||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||| Sbjct 1307 CTATCAGAGAGGAGCAGAGAGGGAGAGTAA-AGAGATGCGACTAAGAGAGAGGAAGAAAG 1365 Query 1543 aTGTGTTTGCAAGCCTATCTCTCT-TC-CTTTCCTTTTTTGTGTTTTGTCGAGAATTGGA 1600 ||||||||||| |||| ||||||| | |||||||||||| ||||||||||||||| ||| Sbjct 1366 ATGTGTTTGCATGCCTCTCTCTCTCTTTCTTTCCTTTTTTTTGTTTTGTCGAGAATCGGA 1425 Query 1601 TATGAACTGATTGATACTCAGTCTCATAAGaaaaaaaaCAA-TAATATGCTGCTCAACtt 1659 || ||||||||||||| || ||||||| | || |||||||| |||||||||||||||||| Sbjct 1426 TAGGAACTGATTGATAGTCGGTCTCATCATAAGAAAAACAAATAATATGCTGCTCAACTT 1485 Query 1660 tttttgaacttttctggtttt-ta-aaatttttttGGATAGGAAAC 1703 ||||||||||||||||||||| | |||||||| ||||||||||| Sbjct 1486 TTTTTGAACTTTTCTGGTTTTCTTTAAATTTTT--GGATAGGAAAC 1529 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65515221400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5