BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66130.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918566 jgi|Araly1|918566|Al_scaffold_0008_3317 2671 0.0
> Ahg918566 jgi|Araly1|918566|Al_scaffold_0008_3317
Length=1767
Score = 2671 bits (1446), Expect = 0.0
Identities = 1654/1752 (94%), Gaps = 23/1752 (1%)
Strand=Plus/Plus
Query 222 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCGAAACCCAGGTCCTCTGCTGGTACCG 281
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 38 ATAACTTAAGGTCATCGCGTTCTAATGCCAAGTCCAAACCCAGGTCCTCTGCTGCTACCA 97
Query 282 CAACGAATCCTAGAGCGTCAAAGAGAGCTCGCCTTTCGGGTGCTAGTGCGACTCAAGAAG 341
|||| |||||||||||||||||||||||||| ||||| | | | | |
Sbjct 98 CAACCAATCCTAGAGCGTCAAAGAGAGCTCGACTTTC-----C----G-G--T------G 139
Query 342 ACTCGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTCGATGAAGCTTTAAGCG 401
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 140 ---CGAGTCTTGTAGATAAGATTAGATTGTCTTTCGAAGATTTTGATGAAGCTTTAAGCG 196
Query 402 GCTTCAAGGTATCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTGTGGGTTGACAAAT 461
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 197 GCTTCAAGGTCTCTTCTGGTTATGAAAGGAGCAAGAATACCGATTTATGGGTTGATAAAT 256
Query 462 ACAGGCCTCGCACCTTGGAAGAGCTTTCTGTTCACAAGAAGAAGGTTGACGAAGTCAAAT 521
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 257 ACAGGCCTCGCACCTTGGAAGAGCTTGCTGTTCACAAGAAGAAGGTTGAAGAAGTCAAAT 316
Query 522 TGTGGTTTC-AGGAAAGTTTGGATTTCTTAAAGAATGGTTTAAGGAATAACGTTCTACTA 580
||||| ||| |||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 317 TGTGG-TTCGAGGAAAGTTTGGATTTCTCAAAGGATGGTTTAAGGAATAATGTTCTACTA 375
Query 581 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTACGTCTATCCTT 640
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 376 GTCACAGGACAAGCTGGAGTCGGAAAATCTGCTACCATCCATTTGATTGCCTCTATCCTT 435
Query 641 GGAGTCACAGTGCATGAGTGGAACGCTCCTATTCCTACCATCTGGCAAGAACATGTGCAC 700
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 436 GGAGTCACAGTGTATGAGTGGAACGCTCCTATTCCTACTATCTGGCAAGAACATGTGCAC 495
Query 701 AACACTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTTGAG 760
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 496 AACTCTAGTTCAGGACTGAAGTACACGTCGAAGCTGGATGAGTTTGAAAACTTTGTCGAG 555
Query 761 AGTACTAGGAAATACGGAGTAATGGCTTCATCAAGTACTGACGGAATAAAGGCGCCCGTT 820
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 556 AGTACTAGGAAATACGGAGTGATGGCTTCATCAAGTACTGAGGGAATAAAGGCGCCCGTT 615
Query 821 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTTTGAAAGGCTGCAA 880
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 616 GTTCTTTTGATTGATGACCTTCCTCTAGCCAATGGGAGGCATGCTTGTGAAAGGCTGCAA 675
Query 881 AATTGCCTACTACTATTGGTGAAATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 940
|| ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 676 AACTGCTTACTTCTATTGGTGAGATCAACGCAGATTCCAACAGTGATATTAATCACTGAC 735
Query 941 CACAATAACGCGGACTCTTCTGACCAGACTGCACGACGCATGGAGGACACACAGTCATCT 1000
|| |||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct 736 TACGATAAAGCGGACTCTTCTGACCAGACTGCGCGAAGCATGGAGGACGCACAGTCATCT 795
Query 1001 CTTGAGCGAGCAGGGGCTTTAAAGGTTGCTTTCAATCCCATCACGAAGAACTCAATTAAA 1060
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 CTTGAGCGAGCAGGAGCTTTAAAGGTCGCTTTCAATCCCATCACGAAGAACTCAATTAAA 855
Query 1061 AAGGTACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACAACTATGGAGATTGAT 1120
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 856 AAGGCACTTCAGAGAATATGTAGGGAAGAGCATTGTAAGGTAACGACTATGGAGATTGAT 915
Query 1121 CAGATGGCAACTGCAAGTGGAGGCGACATCAGACATGCTATTACATCTTTGCAGCTCTTC 1180
|||||||| | ||| |||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 916 CAGATGGCGAGTGCCAGTGGAGGAGACATCAGACATGCTATTACCTCTTTGCAACTCTTC 975
Query 1181 TCCGTTAAGCCAGAGCTAAATCATACTAAGATAAAATCACCAAGGCCTGGCATGGAAGAC 1240
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 976 TCCGTTAAGCCAGACCTAAATCATACTAAGATAAAATCACCACGGCCTGGCATGGATGAC 1035
Query 1241 AATTATCATGGAAACGAGCAGACAATGTACAGTGGTTTGGATAGTGGAATATCTTCCTGT 1300
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1036 AGTTATCATGGAAACGAGCAGACAATGTACAATGGTTTGGATAGTGGAATATCTTCCTGT 1095
Query 1301 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TTTGGTAGAGATGAGACCCTTTCGTTGTTTCACGCTCTGGGCAAGTTTCTCCACAACAAA 1155
Query 1361 AGAGAGACGGATAATGTCATTATATCAGAGTGCAGCAGCTCTCTTGTTCATGACGAGTTT 1420
|||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct 1156 AGAGAGACTGATAATGTCATTGTATCAGATTGCAGCAACTCTCTTGTTCATGACGAATTT 1215
Query 1421 GCAAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GCGAGGTTGCCACTGAAAATGGATGCGCCGGAGAAGGTTCTCAGCCAAGCTCATGGACAG 1275
Query 1481 GCGGGGCGGGTTGTGGATTTTCTACATGAAAATGTGTTAGATTTTGTGAGTGACGGAGCC 1540
|| |||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 1276 GCAGGGCGGGTTGTGGATTTTCTGCATGAAAATGTGCTAGATTTTGTGAGTGAGGGAGCC 1335
Query 1541 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATAGAAGATGCCTGGTGTGTTTCTTCGTATTTGGCGGATGCTGATCTCCTTCTCGCTGAT 1395
Query 1601 ATAAGAGGAAAGATGAGTGGACATAACAACACAGAGGATGTTCCACAGTCAGCCGGTGCC 1660
||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||
Sbjct 1396 TTAAGAGGAAAGATGAGTGGGCATAATAAAACAGAGGATGTTTCACAGTCAGCCGGTGCC 1455
Query 1661 TCGGTTGCTGTTCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 TCGGTTGCTGTCCGTGGTGTGTTGTATGGAAACAAGCAGCCATGTTCATCCAGATGGCAC 1515
Query 1721 GTGATTCGGAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1780
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 GTGATTCGAAAGCCAAAACTCTGGCAAGTGGAGCAATCCTCAATACAAACAAAGAAGAAT 1575
Query 1781 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGAGTGGCAGATATATCAGTGATG 1840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1576 CTGAGAGAGCAGAGGAACATAAGCTATGAGGGGTCAAGGGTGGCAGATATATCAGTGATG 1635
Query 1841 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGCTACAGGGCATCTCCAGATGCGTTT 1900
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1636 GCCACAGAGTATAGCCCCGTGCTGAAATGGCTTAGTTACAGGGCATCTCCAGATGCGTTT 1695
Query 1901 CCGGGAATGGGCGAAGAGACAGATGAGGAGGACAGTGATATTTCTGAAGATGATGAAATA 1960
| |||||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1696 GCAGGAATGGGTGAAGAGACGGATGAGGAGGAGAGTGAAATTTCTGAAGACGATGAAATA 1755
Query 1961 CAAGACTGGTGA 1972
||||| ||||||
Sbjct 1756 CAAGATTGGTGA 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5