BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66170.2
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496998 jgi|Araly1|496998|fgenesh2_kg.8__2814__AT5G66170.1 874 0.0
> Ahg496998 jgi|Araly1|496998|fgenesh2_kg.8__2814__AT5G66170.1
Length=699
Score = 874 bits (473), Expect = 0.0
Identities = 660/740 (89%), Gaps = 53/740 (7%)
Strand=Plus/Plus
Query 2 AACAAATTTCTAATTGTTGAATCATATACCATTATTTTTATATTGGCCATGCATGTGTAT 61
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 AACAAATTTCTAATGGTTAAATCATATACCATTA--TTTATATTGGCCATGCATTTGTAT 58
Query 62 AAGTGGAAGATAGAACAATATTAAAACAATATTAT-TGTGTTTGGTCCTATTTATTACTC 120
|||| | | |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 59 AAGT----G---G---AATA-TAAAACAATATTATCTGTGTTTGGTCCTATTTATTACTC 107
Query 121 TCTGCTCTCTTCCTGAAGCTTCTTCATCTTTTTGTTTGACAAGAAGAGGTAGAGAAGA-- 178
|||||||||||||||||| ||||||| ||||||||| |||||||||| ||||||||
Sbjct 108 TCTGCTCTCTTCCTGAAG---CTTCATC-TTTTGTTTGGCAAGAAGAGGGAGAGAAGATC 163
Query 179 AGATGTCTCAATCAATCTCCTCCAGCACAAAGGCAGAAGAAGTTGTTAGTGTAGATGTGA 238
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AGATGTCTCAATCAATCCCCTCCAGCACAAAGGCAGAAGAAGTTGTTAGTGTAGATGTGA 223
Query 239 GCCAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGACGTTAGGACTCAGGACG 298
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 224 GCGAAGCCAAGACTCTCCTCCAGTCTGGGCATCAATATCTTGATGTTAGGACTCAGGAAG 283
Query 299 AGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 AGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACA 343
Query 359 CACCTCAAGGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC 418
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 344 CACCTCAAGGTAGAGTGAAGAATCAAGACTTCTTGGAGCAAGTCTCTTCTCTTCTCAACC 403
Query 419 CAGCTGATGATATCCTTGTGGGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 CAGCTGATGATATCCTTGTGGGTTGTCAGAGTGGAGCCAGATCCTTAAAAGCCACAACTG 463
Query 479 AACTTGTTGCTGCAGTAAGTGGTTACAAGAAAGTGAGAAACGTGGGAGGTGGCTACTTGG 538
|||||||||| |||| || || |||||||||||||||| ||||||||||||||||||
Sbjct 464 AACTTGTTGCCGCAG---GT--TT-CAAGAAAGTGAGAAACATGGGAGGTGGCTACTTGG 517
Query 539 CTTGGGTGGATCACAGCTTTCCCATCAAC-ACGGAGGAGGAGGAGCCATCTGCTAATTAA 597
||||||||||||||||||||||||||||| | |||||||||||||||||| || || |||
Sbjct 518 CTTGGGTGGATCACAGCTTTCCCATCAACGA-GGAGGAGGAGGAGCCATCCGCAAACTAA 576
Query 598 TAATCTTAAGATTCTCTTCTTTTCTTAATCAAATAATATAACTGCCTGTGTGATGTAGTA 657
| || ||||||||||| ||| || || || | || |||||||||||| ||
Sbjct 577 TCATATTAAGATTCTC----------AAT-AA-TA-TA-AT-TGGCTGTGTGATGTAATA 621
Query 658 A-TCATTTTCAATTTAAAATTC-CAGTTTCTTGTAATCAAAACTTTCGTGTACCA----- 710
| |||||||| ||||| |||| | ||||||||||||||||||||| ||||| |
Sbjct 622 AATCATTTTCTATTTAGAATTTTC--TTTCTTGTAATCAAAACTTTCATGTACTAGGTGC 679
Query 711 AATT-CAATAAAAGCTGTGT 729
|||| |||||||||||||||
Sbjct 680 AATTTCAATAAAAGCTGTGT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5