BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66180.1 Length=1437 Score E Sequences producing significant alignments: (Bits) Value Ahg496995 jgi|Araly1|496995|fgenesh2_kg.8__2811__AT5G66180.1 1882 0.0 Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 261 1e-68 > Ahg496995 jgi|Araly1|496995|fgenesh2_kg.8__2811__AT5G66180.1 Length=1222 Score = 1882 bits (1019), Expect = 0.0 Identities = 1164/1233 (94%), Gaps = 13/1233 (1%) Strand=Plus/Plus Query 15 ATGGAAGAAACGTCCAAGCTACAGTTACCGGAGAGTTTCCTTAGCTTTCTAGAGGCGAAT 74 |||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||| Sbjct 1 ATGGAAGAAACGTCGAAGCTACAGTTACCGGCGACTTTCCTTAGCTTTCTAGAGGCTAAT 60 Query 75 GGCCTTGATCCTTCAATCTATACTCACGGAGATTCAATTCCACGTTATGTAAGGTTGAAA 134 ||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||| Sbjct 61 GGCCTAGATCCTTCAATCTATACTCACGGAAATTCCATTCCACGCTATGTAAGGTTGAAA 120 Query 135 CCTGGATTCGAGGATGCTTTCGAAGAGATTGAATCCGAAATTAACTGTAAACTGGAGAAG 194 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 121 CCTGGGTTCGAGGATGCTTTCGAAGAGATTGAATCCCAAATTAACTGTAAACTGGACAAG 180 Query 195 GTGAATTGGTTACCAGGATTTTACTCCATCCCTCCAGATGTTCATATAGCCAGAACCAAG 254 ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 181 GTGAATTGGTTACCAGGTTTTTACTCTATCCCTCCACATGTTCATATAGCCAGATCCAAG 240 Query 255 GCCTATCAGCAAGGCATGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 314 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCGTATCAGCAAGGCACGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 300 Query 315 CTTGGTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 374 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTTGCTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 360 Query 375 TGTATGATGCTTGACCTACTGGGTCAGAAGGGTACTGCCACCGGTGTCGATGTTGCAAGG 434 ||||||||||||||||| || ||| | ||||| |||||||| |||||||||||||||||| Sbjct 361 TGTATGATGCTTGACCTGCTCGGTGACAAGGGCACTGCCACTGGTGTCGATGTTGCAAGG 420 Query 435 CATCGTCTTGCTGCCTGCAGAACTATGCTTCT-AAAGTATGGGCTTGCTGAAAGGAGCCG 493 ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||| Sbjct 421 CATCGTCTTGCTGCCTGCACAACTATGCTTCTCAAA-TATGGGCTTGCTGAAAGGACCCG 479 Query 494 GCTTTTTCTTGCTGATGGAACCACTTTCTCAGTCCCACCAACCAGAAACCTACCATGTGA 553 |||||||||||||||||||||||||||||||| |||||||||| |||||| | Sbjct 480 TCTTTTTCTTGCTGATGGAACCACTTTCTCAGTGCCACCAACCACTAACCTA-C------ 532 Query 554 GTCATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 613 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 533 --CATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 590 Query 614 AGAAAGGAAACAAGAAGCTAAGGCAAGGAAGAATTCTGTTTTGCCGCAGAATGGACAGGC 673 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 591 AGAAAGGAAACAAGAAGCTAAGGCCAGGAAGAATTCTGTTTTGCCGCAGAATGGGCAGCC 650 Query 674 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTAAAAAAGAATG-AACTTT 732 |||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| Sbjct 651 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTTACAAAGAA-GCAACTTT 709 Query 733 ATAGATCCCTTGACCAAAATGATTATGCATCTTATGGGTATGATAAGGTTCTTGTGGACG 792 ||||||||||||||||| |||||||||||| || ||||||||||||||||||||| |||| Sbjct 710 ATAGATCCCTTGACCAAGATGATTATGCATATTGTGGGTATGATAAGGTTCTTGTAGACG 769 Query 793 CAGAGTGCACACACGATGGTTCGATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 852 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 770 CAGAGTGCACACACGATGGTTCAATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 829 Query 853 AAACTCTGGAACGCCGTGTTCTGGATGCTGAGAGAACCGATACAAACTTAAAAGCTCTTC 912 |||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| Sbjct 830 CAACTCTGGAACGCCGTGTACTGGATGCTGAGAGAACCGATAGAAACTTATCAGCTCTTC 889 Query 913 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACTCTAGTGTACA 972 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 890 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACCCTAGTGTACA 949 Query 973 GCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTTCTGAAA 1032 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 950 GCACTTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTGCTGAAA 1009 Query 1033 ATTTCTCTGCAGAGCTACAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1092 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1010 ATTCCTCTGCAGAGCTAGAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1069 Query 1093 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1070 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1129 Query 1153 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTGTTGTGATACCTCGCTC 1212 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1130 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTTTTGTGATACCTCACTC 1189 Query 1213 AAAAGGGTCGTTCGGTTGATGACTTTACTGAAA 1245 |||| ||||||| ||||||||||| |||| ||| Sbjct 1190 AAAAAGGTCGTTAGGTTGATGACTCTACTTAAA 1222 > Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 Length=1446 Score = 261 bits (141), Expect = 1e-68 Identities = 155/162 (96%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1276 GAAAAACATATTTCACAAAACTCACTATATTGTTGCAAGAAATATAACATGAACAACAAG 1335 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1446 GAAAAACATAAATCACAAAACTCACTATATTGTTGCAAGAAATATAACATGAACAACAAG 1387 Query 1336 TGAGAAAGAGTAGTTTGGTGGTATTGATGCTCTCTTTTGAATGTTTTGATTGAAAATCCT 1395 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1386 TGAGAAAGAGTAGTTTGATGGTATTGATGCTCTCTTTTGAATGTTTTGATGGAAAATCCT 1327 Query 1396 TGAGAAAGAAAAAAGAAGCAGATATGAAGATTTCACAATGCA 1437 |||||||||| ||||||||| | ||||||||||||||||||| Sbjct 1326 TGAGAAAGAAGAAAGAAGCATAAATGAAGATTTCACAATGCA 1285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53745335695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5