BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66190.1 Length=1509 Score E Sequences producing significant alignments: (Bits) Value Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 2255 0.0 > Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 Length=1446 Score = 2255 bits (1221), Expect = 0.0 Identities = 1401/1481 (95%), Gaps = 39/1481 (3%) Strand=Plus/Plus Query 4 AATAACTTATCCTCTCTAACACTTGGCCTCACATTGCCCTTCACACAATCCACACACATC 63 ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 AATAACTTATCCTGTGTAACACTTGGCCTCGCATTGCCCTTCACACAATCCACACACATC 60 Query 64 CAATCACAACCTCATCATATATCTCCCGCTAATCtttttttctttgatcttttttttttt 123 |||||||||||||||||||||||||||||||| | |||||| | || ||||| Sbjct 61 CAATCACAACCTCATCATATATCTCCCGCTAA-C-CTTTTTC--T--TC------TTTTT 108 Query 124 gcttattatttttttGACTTTGATCTCCCATCAGTTCAtcttcttcttcttcttctGATC 183 || || ||||||||||||||||| ||| | || ||||||||||| Sbjct 109 --TT-TT-TTTTTTTGACTTTGATC-GCCA-C----CA----------GTTCTTCTGATC 148 Query 184 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 208 Query 244 CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACAGTGTG 303 || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 209 CCCCACCAAAACCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACACTGTG 268 Query 304 TTAC---AGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 360 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269 TTACAGGAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 328 Query 361 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 388 Query 421 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGA 480 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 389 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTCTTGAACACCAAGATCACCGGCGATGA 448 Query 481 CGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGGTTCCGTATAGAGA 540 ||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 449 CGCTCCCGGTGAGACCTGGCACATTGTCTTCACCACCCAAGGTGAGATTCCGTATAGAGA 508 Query 541 AGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCT 600 ||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 509 AGGGCAATCGATCGGAGTGATTCCTGAGGGAATTGACAAGAACGGGAAGCCGCACAAGCT 568 Query 601 CAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 660 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 569 CAGGCTTTACTCTATCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 628 Query 661 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTG 720 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 629 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATAGCGGAGAGATTGTTAAGGGGGTCTG 688 Query 721 CTCCAACTTCTTGTGTGACTTGAAGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 780 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 689 CTCCAACTTCTTGTGTGACTTGAGGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 748 Query 781 CAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGCTTGGAACAGGAAC 840 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 749 GAAGGAAATGCTTATGCCAAAAGACCCTAATGCCACCATCATCATGCTTGGAACAGGAAC 808 Query 841 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTA 900 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 809 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTCGAGGAACACGAGGACTA 868 Query 901 CAAGTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATA 960 |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 869 CAAGTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTACCCACAAGCAGCTCTCTGCTATA 928 Query 961 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 929 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 988 Query 1021 GGTGAGCAGAGAGCAGACGAACGAGAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1080 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 989 GGTGAGCAGAGAACAGACGAACGACAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1048 Query 1081 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1049 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1108 Query 1141 TGGTCTTAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCGCTTGCTGCTAAAGA 1200 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1109 TGGTCTGAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCACTTGCTGCTAAAGA 1168 Query 1201 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAACAGTGGAATGTTGA 1260 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1169 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAGCAGTGGAATGTTGA 1228 Query 1261 AGTCTACTAAGGAAG-CTTCTGAGGGAGTAATTATATAATGTAGATAAAAAGCTTCTGAT 1319 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1229 AGTCTACTAAGGAAGGCTTCTGAGGGAGTTATTATATAATGTAGATAAAAAGCT---GAT 1285 Query 1320 GCATTGTGAAATCTTCATATCTGCTTCTTTTTTCTTTCTCAAGGATTTTCAATCAAAACA 1379 |||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||| Sbjct 1286 GCATTGTGAAATCTTCATTTATGCTTCTTTCTTCTTTCTCAAGGATTTTCCATCAAAACA 1345 Query 1380 TTCAAAAGAGAGCATCAATACCACCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1439 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1346 TTCAAAAGAGAGCATCAATACCATCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1405 Query 1440 TTCTTGCAACAATATAGTGAGTTTTGTGAAATATGTTTTTC 1480 ||||||||||||||||||||||||||||| |||||||||| Sbjct 1406 TTCTTGCAACAATATAGTGAGTTTTGTGATTTATGTTTTTC 1446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56487833335 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5