BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66400.1 Length=864 Score E Sequences producing significant alignments: (Bits) Value Ahg496967 jgi|Araly1|496967|fgenesh2_kg.8__2783__AT5G66400.1 824 0.0 > Ahg496967 jgi|Araly1|496967|fgenesh2_kg.8__2783__AT5G66400.1 Length=813 Score = 824 bits (446), Expect = 0.0 Identities = 540/583 (93%), Gaps = 15/583 (3%) Strand=Plus/Plus Query 275 AGGGTACGGAACCGGTGGCCAAGGATACGGAACCGGGACCGGGACTGAAGGCTTTGGAAC 334 ||| || ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 232 AGGTTATGGAACTGGTGGCCAAGGATACGGCACCGGGACCGGGACTGAAGCCTTTGGAAC 291 Query 335 TGGCGGAGGAGCTAGGCACCACGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 394 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 292 TGGCGGAGGAGCTAGGCACCAAGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 351 Query 395 GGGAGGAATGCTTCACCGCTCCGGATCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 454 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 352 GGGAGGAATGCTTCATCGCTCCGGGTCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 411 Query 455 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCA 514 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCC 471 Query 515 TGATCAGTC-T--GGTCAAGCTCAAGCGATGGGCGGCATGGGATCCGGATATGATGCTGG 571 ||| ||||| | ||||||||||||| |||| ||||||||||| |||||||||||||||| Sbjct 472 TGACCAGTCGTCTGGTCAAGCTCAAGGGATGAGCGGCATGGGAACCGGATATGATGCTGG 531 Query 572 TGGCTACGGTGGTGAGCACCACGAGAAGAAGGGGATGATGGACAAGATCAAGGAAAAGCT 631 ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||| Sbjct 532 TGGCTACGGCGGTGAGCGCCAAGAGAAGAAGGGGATGATGGACAAGATCAAGGATAAGCT 591 Query 632 TCCCGGTGGTGGC---CGTTAAGCTTCGAACAATC----GTGTATACATATTAAATAAAA 684 |||||||||||| ||||||||||| ||||| | || |||||||||| ||||||| Sbjct 592 TCCCGGTGGTGGTGGTCGTTAAGCTTCAAACAAACAAACGTCTATACATATTGAATAAAA 651 Query 685 ATAATGAGGGTTTGTAACGCAGTCGCATTCGGTCGTTGTAT-TGTGCTTTTTATGTATGT 743 |||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 652 ATAAGGAGGGTGTGTAACGCAGTCGCATTTGGTCGTTGTATGTGTGCTTTTTATGTATGT 711 Query 744 ACGTCCTGCGATGTGT-GTTG-TTTACT-TACATGAGTGTGTAATGAGCATCTGGCTCTT 800 |||||||||||||||| |||| |||| | |||| |||||||||||||||||||||||||| Sbjct 712 ACGTCCTGCGATGTGTTGTTGGTTTA-TATACAGGAGTGTGTAATGAGCATCTGGCTCTT 770 Query 801 TTTATGTTCTGAGATGTTTGTGTTATGTAATTTCACATCTATA 843 ||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 771 TTTATGTTCTGAGATGTTTGTATTATGTAATTTCATATCTATA 813 Score = 209 bits (113), Expect = 2e-53 Identities = 171/195 (88%), Gaps = 20/195 (10%) Strand=Plus/Plus Query 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGttt--t-tt-tAACTAGCT 56 |||||||||||||||||||||||||||||||||||||||||||| | || | | ||||| Sbjct 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTTAATATTCT-A-TAGCT 58 Query 57 TAGCTCAAAGTGTTTGCTT--------AAG-ACAAGAAGAACATGGCGTCTTACCAGAAC 107 ||||||||||||||||||| ||| | |||||||| ||||||||||||||||| Sbjct 59 TAGCTCAAAGTGTTTGCTTAAGAGAAGAAGAAGAAGAAGAAGATGGCGTCTTACCAGAAT 118 Query 108 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAGCAGTATG-ACGA 166 |||||||||||||||||||||||||||||||||||||||||||||||| | || |||| Sbjct 119 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAG---T-TGGACGA 174 Query 167 GTACGGAAATCCGAT 181 ||||||||| ||||| Sbjct 175 GTACGGAAACCCGAT 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31985127363 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5