BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66460.1 Length=2011 Score E Sequences producing significant alignments: (Bits) Value Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281 2078 0.0 > Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281 Length=1296 Score = 2078 bits (1125), Expect = 0.0 Identities = 1240/1297 (96%), Gaps = 2/1297 (0%) Strand=Plus/Plus Query 200 atgaagCTTCTG-GCTCTGTTTCCATTTCTAGCGATCGTGATCCAACTCAGCTGTTGGGA 258 |||||||||||| | | |||||| |||||||||||||||||||||||| ||||| ||||| Sbjct 1 ATGAAGCTTCTGTG-TTTGTTTCTATTTCTAGCGATCGTGATCCAACTAAGCTGCTGGGA 59 Query 259 GCTAGGAACAGATGCATTACCGAGCGGTGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 318 ||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 60 GCTAGGAGCAGATGCGTTATCGAGCAATGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 119 Query 319 TCTCAATGGCTATCCATATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTAGC 378 |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 TCTCAATGGCTACCCTTATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTTGC 179 Query 379 CTCCGATCCATCCCAACGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 438 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CTCTGATCCATCCCAAAGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 239 Query 439 ATTGACCGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 498 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 ATTAACTGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 299 Query 499 CCCTGGCTCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGTTAGCTGAGGCAAG 558 ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 300 TCCTGGATCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGATAGCTGAGGCAAG 359 Query 559 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 419 Query 619 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTTTCTTCTGAAGACGACTT 678 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 420 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTCTCTTCTGAAGACGACTT 479 Query 679 CTTCACTGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCAAGGCTGTGCTGAACAG 738 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 480 CTTCACAGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCATGGCTGTGCTGAACAG 539 Query 739 ATTCAATACCTTTACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 798 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ATTCAATACCTTCACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 599 Query 799 CATGAACGAGCCCCGTTGCCCCTCTGATCCTTCCGGAAGAGCCATTCAGGCTTGGATTAC 858 |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 600 CATGAACGAGCCCCGTTGCCCCTCAGATCCTTCCGGAAGAACCATTCAGGCTTGGATTAC 659 Query 859 TGAAATGGCTGCTCATGTGAAATCACTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 918 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 660 TGAAATGACTGCTCATGTGAAATCGCTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 719 Query 919 AGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTTAACCCACCTGGCCAGTTTGG 978 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 720 GGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTAAACCCACCTGGCCAGTTTGG 779 Query 979 AACCGATTTCATCGCCAATAACCGCATTCCCGGCATTGATTTCGTCACGGTTCACTCTTA 1038 ||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||| Sbjct 780 AACCGATTTTATCGCCAATAACCGCATCCCCAGCATTGATTTCGTTACGGTTCACTCTTA 839 Query 1039 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 899 Query 1099 GCTAGACGCACACATCCAAGACGCACAGAACGTTCTTCACAAACCAATAATATTAGCAGA 1158 ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 900 GCTCGACGCACATATCCAAGACGCACAGAACGTTCTTCACAAACCCATAATATTAGCAGA 959 Query 1159 GTTTGGTAAATCAATGAAGAAACCAGGTTATACCCCAGCGCAGAGAGACATCGTCTTCAA 1218 |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 960 GTTTGGCAAATCAATGAAGAAACCAGGTTATACCCCAGCACAGAGAGACATTGTCTTCAA 1019 Query 1219 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGAGGTGCAGCAGCAGGAGGATT 1278 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1020 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGTGGTGCAGCAGCAGGAGGATT 1079 Query 1279 GTTCTGGCAACTTCTGGTAAACGGAATTGATAATTTTCAAGATGGGTATGGGATCATACT 1338 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1080 GTTCTGGCAACTTCTGGTAAATGGAATTGATAATTTTCAAGATGGCTATGGGATCATACT 1139 Query 1339 TAGCCAAAGCTCGTCGACCGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1398 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TAGCCAAAGCTCGTCCACGGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1199 Query 1399 TAGGAAAATCTTCGCTAGGATGATCAATGTGGAGAAATGGAAGAGAGCGAGAGGTCAGGG 1458 | |||||||||| || |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 1200 TCGGAAAATCTTTGCGAGGATGATCAATGTGGAGAAATGGAAGAGAGCAAGAGGCCGGGG 1259 Query 1459 ACAAGTTGGGAAACGAGGTCACAAAATCAATAACTGA 1495 |||||| | |||||||||||||| ||||| |||||| Sbjct 1260 ACAAGTAAGAAAACGAGGTCACAACATCAAAAACTGA 1296 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75609136325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5