BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66530.1
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951588 jgi|Araly1|951588|scaffold_803475.1 1592 0.0
Ahg475624 jgi|Araly1|475624|fgenesh2_kg.2__754__ATCG00860.1 60.2 3e-08
Ahg497139 jgi|Araly1|497139|fgenesh2_kg.9__104__ATCG00950.1 56.5 4e-07
Ahg333078 jgi|Araly1|333078|fgenesh1_pm.C_scaffold_9000106 56.5 4e-07
> Ahg951588 jgi|Araly1|951588|scaffold_803475.1
Length=966
Score = 1592 bits (862), Expect = 0.0
Identities = 928/961 (97%), Gaps = 0/961 (0%)
Strand=Plus/Plus
Query 99 AAGGAGAGAAAAACAAAAATGGCGATTGTTTCCGTCTCTAACTCTTTTCTCACTTTCAAT 158
||||||| |||| |||| |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 4 AAGGAGATAAAAGCAAACATGGCGATTGTTTCTGTCTCTCACTCTTTTCTCACCTTCAAT 63
Query 159 TCTCCCAATCAGCTCCGATTTAGCCGAAGAAGATTCTCTGCCATGGCTTCTTCAACTACT 218
||||| || ||||||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 64 TCTCCTAACCAGCTCCGACTTAGCCGAAGAAGATTCTCTGCCATGGCTACTTCGACTACT 123
Query 219 GGAGTGAGAGTCGCTGAAGGAGAAGGCAATTTGCCAAAACTTGTCCTTACTTCTCCTCAG 278
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 GGAGTGAGAGTCGCTGAAGGAGAAGGCAATTTGCCAAAACTAGTCCTTACTTCTCCTCAG 183
Query 279 AACAGCGAGGCTGAGATATATCTCTTCGGAGGCTGCATTACTTCTTGGAAAGTTGCGAGC 338
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 184 AACAGCGAGGCTGAGATATATCTCTTTGGAGGCTGCATTACTTCTTGGAAAGTTGCGAAT 243
Query 339 GGTAAAGATCTTCTTTTTGTCAGACCAGATGCTGTCTTCAATAAGATTAAGCCCATTAGC 398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGTAAAGATCTTCTTTTCGTCAGACCAGATGCTGTCTTCAATAAGATTAAGCCCATTAGC 303
Query 399 GGAGGGATTCCACATTGTTTTCCACAGTTTGGACCTGGGCTAATTCAACAGCATGGGTTT 458
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 304 GGAGGGATTCCACATTGTTTTCCACAGTTTGGACCTGGACAAATTCAACAGCATGGGTTT 363
Query 459 GGAAGGAACATGGACTGGTCTGTTGTCGATTCCCAGAATGCAGATGACAATGCTGCTGTT 518
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 GGAAGGAACATGGACTGGTCTGTTGTCGATTCCCAGAATGCTGATGACAATGCTGCTGTT 423
Query 519 ACTCTTGAGCTTAAGGATGGTCCCTATAGTCGAGCCATGTGGGACTTTGCTTTCCAGGCT 578
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 ACTCTTGAGCTTAAGGATGGTCCCTATAGTCGAGCTATGTGGGACTTTGCTTTCCAGGCT 483
Query 579 CTATACAAGGTCATTGTTGGCGCGGACTCCCTTTCCACTGAGCTAAAGATTACAAACACA 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTATACAAGGTCATTGTTGGCGCGGACTCCCTTTCCACTGAGCTAAAGATTACAAACACA 543
Query 639 GACGATAAACCATTTTCTTTCAGCACTGCGTTGCATACTTACTTCCGTGCTTCTTCTGCG 698
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 544 GACGATAAACCATTTTCTTTCAGCACTGCGTTGCATACTTACTTCCGTGCTTCTTCCGCG 603
Query 699 GGGGCCTCCGTGAGAGGTCTAAAGGGTTGTAAAACTCTCAATAAGGATCCAGACCCTAAG 758
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 604 GGGGCCTCCGTGAGAGGTCTAAAGGGTTGTAAAACTCTCAATAAGGATCCTGACCCTAAG 663
Query 759 AACCCAATAGAGGGTAAAGAAGACAGGGATGCAGTCACTTTTCCTGGATTTGTGGATACC 818
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 664 AACCCAATAGAGGGTAAAGAAGAAAGGGATGCAGTCACTTTTCCTGGATTTGTGGATTGC 723
Query 819 GTCTATCTTGATGCTCCCAATGAATTGCAGTTTGATAATGGCTTGGGTGATAAAATAATC 878
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GTCTATCTGGATGCTCCTAATGAATTGCAGTTTGATAATGGCTTGGGTGATAAAATAATC 783
Query 879 ATCAAAAACACAAATTGGTCGGATGCGGTCTTGTGGAACCCGCATACTCAGATGGAGGCT 938
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATCAAAAACACAAATTGGTCAGATGCGGTCTTGTGGAACCCGCATACTCAGATGGAGGCT 843
Query 939 TGTTACAGAGACTTTGTGTGCGTGGAAAATGCAAAGCTTGGGGATGTCAAGCTAGAGCCG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TGTTACAGAGACTTTGTGTGCGTGGAAAATGCAAAGCTTGGGGATGTCAAGCTAGAGCCG 903
Query 999 GGACAGTCTTGGACTGCAACACAACTTCTCAGCATCAGTTGAAAACATTGTACTTTAAAC 1058
||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||| ||
Sbjct 904 GGACAGTCTTGGACTGCAACACAGCTTCTCAGTATCAGTTGAAAACAATGTAATTTACAC 963
Query 1059 T 1059
|
Sbjct 964 T 964
> Ahg475624 jgi|Araly1|475624|fgenesh2_kg.2__754__ATCG00860.1
Length=6108
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 8 CTCTATTCAATCCTTTTCCTTCTTCTTGTTGC 39
||||||||||||||||||||||||||||||||
Sbjct 3595 CTCTATTCAATCCTTTTCCTTCTTCTTGTTGC 3626
> Ahg497139 jgi|Araly1|497139|fgenesh2_kg.9__104__ATCG00950.1
Length=2807
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 39 CCCTAGTACGAGAGGACCGGGAAGGACGCA 68
||||||||||||||||||||||||||||||
Sbjct 2665 CCCTAGTACGAGAGGACCGGGAAGGACGCA 2694
> Ahg333078 jgi|Araly1|333078|fgenesh1_pm.C_scaffold_9000106
Length=234
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 10 CTATTCAATCCTTTTCCTTCTTCTTGTTGC 39
||||||||||||||||||||||||||||||
Sbjct 234 CTATTCAATCCTTTTCCTTCTTCTTGTTGC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41630225364
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5