BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66570.1 Length=1244 Score E Sequences producing significant alignments: (Bits) Value Ahg951584 jgi|Araly1|951584|scaffold_803471.1 1808 0.0 Ahg915004 jgi|Araly1|915004|Al_scaffold_0001_5258 285 5e-76 > Ahg951584 jgi|Araly1|951584|scaffold_803471.1 Length=1121 Score = 1808 bits (979), Expect = 0.0 Identities = 1067/1110 (96%), Gaps = 3/1110 (0%) Strand=Plus/Plus Query 85 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCTACATTCCTCCAGTCGGCGAAGATCGC 144 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 14 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGC 73 Query 145 CACCGCTCCTTCTCGCGGAAGTTCTCACCTCCGATCGACTCAAGCCGTCGGCAAATCTTT 204 |||||||||||||||||| ||| |||||||||| || |||||| |||||||||||||||| Sbjct 74 CACCGCTCCTTCTCGCGGCAGTGCTCACCTCCGGTCTACTCAATCCGTCGGCAAATCTTT 133 Query 205 TGGGCTCGAAACTTCCTCGGCTCGCCTCACTTGCTCCTTCCAGTCTGACTTTAAGGACTT 264 ||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 134 CGGGCTAGATACTTCCTCTGCTCGCCTCACTTGCTCCTTCCAATCTGACTTCAAGGACTT 193 Query 265 CACCGGTAAATGCTCCGACGCTGTCAAAATCGCCGGATTCGCTCTTGCCACCTCTGCTCT 324 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253 Query 325 CGTCGTCTCGGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCA 384 ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313 Query 385 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCTACTATTGA 444 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 314 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCAACTATTGA 373 Query 445 CGGTGGCTCTGAGACTTTCTCGTTCAAACCCGGAAAGTATGCAGGAAAGAAGTTCTGCTT 504 ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 374 CGGTGGCTCTGAGACATTCTCGTTCAAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGCTT 433 Query 505 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTT 564 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 434 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAGTT 493 Query 565 CCAGAACACAAAGCTCATGACCCGTCTTACCTACACCCTTGACGAGATCGAAGGACCCTT 624 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 494 CCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCCTT 553 Query 625 CGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTATGCTGC 684 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 554 TGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCTGC 613 Query 685 AGTCACAGTCCAACTTCCAGGAGGTGAACGTGTGCCATTCCT-TTTCACAGTCAAACAGC 743 |||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||| Sbjct 614 AGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTT-ACAGTCAAACAGC 672 Query 744 TTGACGCCTCAGGCAAACCAGACAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 803 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 673 TTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 732 Query 804 GCTCTTCCTTCTTGGACCCAAAGGGCCGTGGTGGATCCACAGGATATGACAACGCCGTGG 863 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 733 GCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTGG 792 Query 864 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAACGTGAAGAACA 923 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 793 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAATGTGAAGAACA 852 Query 924 CTGCCGCTTCAGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 983 | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 CGGCAGCTTCGGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 912 Query 984 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCGGATACTGACTTGGGTGCTAAGGTAC 1043 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 913 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGGTAC 972 Query 1044 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1032 Query 1104 TTTTCCGTTGATTGTGTTTGATGATAATGATAACATCTTTTGATGCTTTCTTCGTTTATC 1163 ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1033 TTT-CTGTTGATTGTGTTTGATGATAATGACAACATCTTTTGATGCTTTCTTCGTTTATC 1091 Query 1164 TCTCTTATATAAAATGCACATGCCTAAGAT 1193 ||||||||| |||||||||||||||||||| Sbjct 1092 TCTCTTATAAAAAATGCACATGCCTAAGAT 1121 > Ahg915004 jgi|Araly1|915004|Al_scaffold_0001_5258 Length=276 Score = 285 bits (154), Expect = 5e-76 Identities = 194/213 (91%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 531 CAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTTCCAGAACACAAAGCTCATGACCCGTC 590 |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| Sbjct 38 CAGACAGTGTAAGCAAGAACGCGACTCCTGAGTTCCAGAACACCAAGCTCATGACCCGTC 97 Query 591 TTACCTACACCCTTGACGAGATCGAAGGACCCTTCGAGGTTGCTTCAGACGGAAGCGTCA 650 | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 98 TCACCTACACCCTTGTCGAGATCGAAGGACCCTTTGAGGTTGCTTCAGACGGAAGCGTCA 157 Query 651 ATTTCAAGGAAGAAGATGGAATCGACTATGCTGCAGTCACAGTCCAACTTCCAGGAGGTG 710 ||||||||||||||||||||||||| | |||||| || |||||||| ||||||||||||| Sbjct 158 ATTTCAAGGAAGAAGATGGAATCGATTGTGCTGCTGTGACAGTCCAGCTTCCAGGAGGTG 217 Query 711 AACGTGTGCCATT-C-CTTT-TCACAGTCAAAC 740 | |||||||||| | |||| | || ||||||| Sbjct 218 AGTGTGTGCCATTACTCTTTAT-ACTGTCAAAC 249 Score = 60.2 bits (32), Expect = 3e-08 Identities = 37/39 (95%), Gaps = 2/39 (5%) Strand=Plus/Plus Query 398 ATGGAAGTGAAAGGAACTGGAACGGCTAAC-CAGTGCCC 435 |||||||||||||||||||||||||||||| | |||||| Sbjct 1 ATGGAAGTGAAAGGAACTGGAACGGCTAACAC-GTGCCC 38 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46471835823 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5