BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66580.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496947 jgi|Araly1|496947|fgenesh2_kg.8__2763__AT5G66580.1 1118 0.0
> Ahg496947 jgi|Araly1|496947|fgenesh2_kg.8__2763__AT5G66580.1
Length=758
Score = 1118 bits (605), Expect = 0.0
Identities = 711/762 (93%), Gaps = 8/762 (1%)
Strand=Plus/Plus
Query 18 ACAACTCTTAAGAATAAATTTAAACTCACGAGTCAAGTC-AGAGAGTTAAACGTTTTCAA 76
|||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||
Sbjct 1 ACAACTCTTAAGAATAAACTTAAACTCACGAGTCAAGTCAATAGAGTTTAACGTTTTCAA 60
Query 77 AGACACTTAAACTAAAAATGGGAGCGTGCGCTTCACGTGAATCTTTGAGGAGTGATTCAG 136
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 AGACACATAAAC-AAAAATGGGAGCGTGCGTTTCACGTGAATCTTTGAGGAGCGATTCAG 119
Query 137 CGAAGCTGATATTACTCGACGGTACTTTACAGGAGTTCTCATCTCCGGTCAAAGTTTGGC 196
||||||| ||| | |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 120 CGAAGCTTATACTCCTCGACGGGACTTTACAAGAGTTCTCATCTCCGGTCAAAGTTTGGC 179
Query 197 AGATTTTGCAAAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 256
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATTCTACAGAAGAACCCTACGAGTTTCGTCTGTAACTCAGACGAAATGGACTTCGACG 239
Query 257 ACGCAGTTTCAGCTGTCGCCGGCAACGAAGAGCTCCGATCAGGGCAGCTCTATTTTGTCT 316
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 240 ACGCAGTTTCAGCTGTCGCTGGCAACGAAGAGCTCCGATCAGGGCAGCTTTACTTTGTCT 299
Query 317 TACCTCTGACGTGGCTCAACCATCCGTTAAGGGCGGAGGAAATGGCGGCCTTGGCCGTGA 376
| ||||||||||||||||| |||||| || ||||||||||||||||||||||||| || |
Sbjct 300 TGCCTCTGACGTGGCTCAATCATCCGCTACGGGCGGAGGAAATGGCGGCCTTGGCTGTTA 359
Query 377 AAGCTAGTTCGGCGTTGACCAAGAGCGGTGGCGTCGGTTGGGTTTCCGGCGACGACGATG 436
||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 360 AAGCTAGTTTGGCGTTGACCAAGAGCGGCGGCGTTGGTTGGGTTTCCGGTGACGACGATG 419
Query 437 TAACGACATCGGAAAAAACTTACCAAAAGAAAAACATTGCCGGAGTTAAGACAAACGGTG 496
|| ||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 420 TAGCGATATCGGAAAAAACTTACCAAAAGAAAAACATCGCCGGAGTAAAGACGAACGGTG 479
Query 497 GTGGCGGAAGAGGTTGCGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGAGCACGATCG 556
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 GTGGCGGAAGAGGTTGTGGTAAAGGGAAGAGGCGATTCACGGCTAATTTGACCACGATCG 539
Query 557 CCGAGTAGGGTCAATTTAGTCATTTTGAGAAAAA--TG-GACCGACGTATAAATTGTAAT 613
|||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||
Sbjct 540 CCGAGTAGGGTCAATTTAGTCATTTTCAGAAAAAAATTCGACCGACGTATAAATTGTAAT 599
Query 614 TAGAAATGTTTGACtttttttttATGGAGAACAAATTATCCAGTAGATGtttttttttAT 673
|||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||
Sbjct 600 TAGAGATGTTTGACTTTTTTTTTTTGGAGAAAAAATTATCCAGTAGAT-TTTTTTT--AT 656
Query 674 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCATTGATGTGATTCCAATC 733
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 TGCTCAGTAATTGAGAAATGGGCACGAGGATGAAGATATTCCGTTGATGTGATTCCAATC 716
Query 734 TTAATAACATTGCAATTTCGTAGCTATATAAATCATTTCATG 775
||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 717 TTAATAACAATGCAATTTCGTAGCTATATGAATCCTTTCATG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5