BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66590.1 Length=694 Score E Sequences producing significant alignments: (Bits) Value Ahg496946 jgi|Araly1|496946|fgenesh2_kg.8__2762__AT5G66590.1 863 0.0 > Ahg496946 jgi|Araly1|496946|fgenesh2_kg.8__2762__AT5G66590.1 Length=653 Score = 863 bits (467), Expect = 0.0 Identities = 579/631 (92%), Gaps = 16/631 (3%) Strand=Plus/Plus Query 5 tttttttATACATCTTTAATGACTATATAAACCAAACACTGATCTTTTTCAGGTTGCGAA 64 |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 TTTTTTTATATACCTTTAATGACTATATAAACCGAACACTGATCTTTTTCAGGTTGCGAA 60 Query 65 T--A--AACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCATCT 120 | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 TAAACCAACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCGTCT 120 Query 121 CCGTCAAAGCCATCTCACCGGCGGCGAAACTGAAACCCAAACAAATCGTTTCCACTTCTC 180 |||||| ||||||||| | || ||||| ||| |||||||||||| | | || | Sbjct 121 CCGTCACAGCCATCTCTTCTGCTGCGAATCTGGAACCCAAACAAA-------C-CGTC-C 171 Query 181 CTCCACCTCCTCCAACAATCTCTGCAGCAGCTAAAGCTTTCACCGATGCGCACAACAAGG 240 || | || |||| |||||||| |||| |||||||||||||| |||||||||||||||| Sbjct 172 CT--A-CTTCTCCGGCAATCTCTACAGCGGCTAAAGCTTTCACGGATGCGCACAACAAGG 228 Query 241 CCAGAGCCATGGTTGGTGTTCCACCACTAGTTTGGAGCCAGACGTTGGAAGCTGCTGCGA 300 ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 229 CCAGAGCCATGGTCGGTATTCCACCACTAGTTTGGAGCCAGACGCTGGAAGCTGCTGCGA 288 Query 301 GTCGGTTGGCTCGTTACCAGAGGAACCAAAAGAAGTGTGAGTTCGCGAGTCTAAACCCTG 360 ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 289 GTCGGCTGGCTCGTTACCAGAGGAACCAGAAGAAGTGTGAGTTCGCGAGTCTTAACCCTG 348 Query 361 GAAAATACGGCGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 420 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GGAAATACGGAGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 408 Query 421 CTGTGGAGACTTGGGTGAAGGAGAAACCTTTCTACAATTATAAGTCAGACACGTGTGCTG 480 | |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 409 CGGTGGAGACTTGGGTGAAGGAGAAAACTTTCTACAACTACAAGTCAGACACGTGTGCTG 468 Query 481 CGAACCACACGTGCGGGGTTTATAAACAAGTCGTCTGGAGAAACTCTAAAGAGCTCGGGT 540 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | Sbjct 469 CGAACCACACGTGCGGGGTCTATAAACAAGTCGTGTGGAGAAACTCTAAAGAGCTCGGAT 528 Query 541 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTGTTGACCATTTGTTTTTACAATCCTC 600 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 529 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTTTTGACCATTTGTTTTTACAATCCTC 588 Query 601 CTGGAAATGTAATTGGCCAAAAGCCTTACTA 631 | |||||| |||||||||||||||||||||| Sbjct 589 CGGGAAATATAATTGGCCAAAAGCCTTACTA 619 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25504231473 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5