BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66820.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332886 jgi|Araly1|332886|fgenesh1_pm.C_scaffold_8002229 1936 0.0
> Ahg332886 jgi|Araly1|332886|fgenesh1_pm.C_scaffold_8002229
Length=1578
Score = 1936 bits (1048), Expect = 0.0
Identities = 1411/1583 (89%), Gaps = 38/1583 (2%)
Strand=Plus/Plus
Query 42 ATGTTCTTTTCAGACATGGAGCGAAAAACCCTAGCGATTACGCCTCCTTCCTTCTTCTTC 101
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTCTTTTCAGACATGGAGCGAAAAACTCTAGCGATTACGCCTCCTTCCTTTTTCTTC 60
Query 102 CACCTTGGAGGAGGAGCATTTGGTTCATCAAAGGCGTTTCATTGTCTTCTCCTTCTCTCA 161
|| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 CATTTTGGAGGAGCATCATTTGGTTCATCAAAGGCATTTCATTGTCTTCTCCTTCTCTCA 120
Query 162 TGTCTATTGCTTTCATCAGTCAATACATTGCATAACTTAGCTGAATATGGTTACAACACT 221
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 TGTCTATTACTTTCATCAGTTAATACATTGCATAACTTAGCTGAATATGGCTACAACAAT 180
Query 222 GGTTCTGCTGCTATGGAGTTTCAGGGCTTTATTAATGGTGAAGATTCTGGGAGTGTAGCA 281
||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct 181 GGTTCTGCTGCTAAGGAGTTTCAAGGCTTTATTAATGGTGAAGATTCTGAGAGTATAACA 240
Query 282 ATCCAGAAA-TC-TGACCAGAATGTTTGTCCTAGTTCACAGCTGTTTTGTTTCCTTTCAG 339
||||| ||| | | |||||||||||||||| | |||| || |||||||||||||| |||
Sbjct 241 ATCCA-AAAGACAT-ACCAGAATGTTTGTCCCAATTCAGAGTTGTTTTGTTTCCTTCCAG 298
Query 340 CTTTAGGATCAGAGAATCGGTCTGATCCATTTG----------T--GTTGGCTTGTCCCA 387
||||||||||| ||||||||| ||||||||||| | |||| ||||||| |
Sbjct 299 CTTTAGGATCAAAGAATCGGTATGATCCATTTGTACCCTTTTTTGGGTTGCCTTGTCCTA 358
Query 388 AAGAATCACGGAGTAGCTCTGCTCTGATCAGAAAAAATCTATCTGGTGTTGTGTGGCTAT 447
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 359 AAGAATCACGGAGTAGCTCTGTTCTGATCAGAAAAAATCTATCTAGTGTTATGTGGCTAT 418
Query 448 CTCTGAAGCCTGTCCACATCATAGAGTTTCAGCCATTTACTGGATTCTTTCACATTGGAG 507
|||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 419 CTCTTAAGCATGTCCACATCATAGAGTTTCAGTCATTTACTGGATTCTTTCACATAGGAG 478
Query 508 ACACTTGTTACGAGCCTATGTCCAAAGAGCTCTATACTAAGAAGACCACAAGGGAGTTAA 567
|||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||
Sbjct 479 ACACTTGTTACGAGCCTATGTCGAATGAACTCTATACTAAGAAGATCACAAGGGAGTTAA 538
Query 568 GTA-T--TACGGTTTCAGGAAAACAATGTGGAGGAAATGGTTTTATGGTGAACCATCCA- 623
||| | ||| ||||| |||||||| |||||| ||||| ||||||||||||||||| ||
Sbjct 539 GTATTACTACAGTTTCGGGAAAACAGTGTGGAAGAAATTGTTTTATGGTGAACCAT-CAG 597
Query 624 TGTGAAGGATTTTCATTAGAACCAGGGGATTCCATAAAGTTTCTCTTTTTCTACCAGAGT 683
|||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||| |
Sbjct 598 TGTGAAGGATTTTCATTAGAACCAAGGTATTCCATCAAGTTTCTCTATTTCTACCAGACT 657
Query 684 GAACTCTCTTGGGCATCTGGAGTTGCTGTTTTTGCAGTACCTATGAAGGCGACCGCACCT 743
|||||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||
Sbjct 658 GAACTCTCTTGGGCATATGGAGTTGTTGTTTTTGCAATACCTATGAAGGCCACTGCACCT 717
Query 744 GTTTTGATGCTTAGTCTCTACAAAAAACCGGTCTTTTGGGTGCGGACGAAGAAATTCGCA 803
||||||||||||| ||||| |||||| ||||||||||||||||| || ||||||||| ||
Sbjct 718 GTTTTGATGCTTAATCTCTGCAAAAAGCCGGTCTTTTGGGTGCGAACAAAGAAATTCTCA 777
Query 804 ATTGCGGTTCTTATTGCTGCAGCTCTACTCATTCTGATATTTTGCTTCAATGATCACTTC 863
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 778 ATTGCGGTTCTTATTGCTGCTGCTCTACTCATTTTGATATTTTGCTTCAATGATCACTTC 837
Query 864 ATCGAGGAGAACAACAAGAGAAACAATAGCAACCACATGGAGTCGAGAGAAGTTGAGAAA 923
|| ||||||||||| ||| ||||| || ||||||||||||||| ||||||||| ||||||
Sbjct 838 ATTGAGGAGAACAATAAGGGAAACCATCGCAACCACATGGAGTTGAGAGAAGTGGAGAAA 897
Query 924 CCATCTACGATCACAATATCCCCTGAAATGGATTCTCTGCTAAGATCCATAAGCAAAGAA 983
|| |||||||||| ||| ||||||| |||| ||| | |||||||||||||||||||||||
Sbjct 898 CCTTCTACGATCAAAATCTCCCCTGCAATGAATTATGTGCTAAGATCCATAAGCAAAGAA 957
Query 984 AGCCTGCAAGTGTTCGATGAGGTTCCCAAGAACAGCA-GC-AGC-G-TTAAGCCAGTTGC 1039
||||| ||||||||||||||||||||||||| || | || || | || | ||| |
Sbjct 958 AGCCTCCAAGTGTTCGATGAGGTTCCCAAGAGCATAAAGCCAGTTGCTTCTTCT-GTTTC 1016
Query 1040 TTCTTCACACGAAGAAGAAGCATCAGAAGCTGTGAATCTCACTGTAAAGACAGCGAAAGA 1099
||||| | | | |||||| ||||||||| ||| ||||||||||||||||| |||| |||
Sbjct 1017 GTCTTC-C-C-ATGAAGAATCATCAGAAGATGTTAATCTCACTGTAAAGACTGCGATAGA 1073
Query 1100 CAAGAAGAGGCGCCGTAACAAGAAAAAGAAGAAAGGAGGAATCAACGGATTAACACCAGA 1159
||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||| ||
Sbjct 1074 CAAGAAGAGACGCCGTAACAGGAAAAAAAAGAAAGGAGGAATCAACAGATTAACACCCGA 1133
Query 1160 GTGCACAGATGTTTCAAGCAGTTACAGCGGAAACTCAACTCCTAGGTCTCCAATATCACC 1219
|| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1134 GTACACAAATGTTTCAAGCAGTCACATTGGAAACTCAACTCCTAGGTCTCCAATATCACC 1193
Query 1220 AGAACCACCTACTACT-C--AAGCCGCAACGAAGCTAGTAAAGCCTCCTACTAAACCGGT 1276
||| |||||||||||| | ||||| ||||||||| || || ||||||| || |||||
Sbjct 1194 AGAGCCACCTACTACTACTCAAGCCACAACGAAGCCCGTGAACCCTCCTA--AA-CCGGT 1250
Query 1277 CCTATCGCACTCAGCAACGTTTCCGGTTTCAGGGGTTAAGTCAATGATCATACAACGAAG 1336
|||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1251 TCTATCGCACTCAACAACATTTCCGGTTTCAGGGGTTAAGTCAAAGATTATACAACAAAG 1310
Query 1337 CTCACTGGCTCCAAATGTGAGAGCACCTGGAGCGAAATCAAGAACCGAAGTGAAAGAAGA 1396
|| || |||||||||||||||||| ||| | |||||||||||||||| |||||||||||
Sbjct 1311 CTTACGGGCTCCAAATGTGAGAGCTCCTAGTGCGAAATCAAGAACCGGGGTGAAAGAAGA 1370
Query 1397 GAAAGCGAAAGAGTATAGGTACTATGATATCTGGGGAGATCACTTGACAGGGCTTAATTT 1456
|||||||||||||||| |||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 1371 TAAAGCGAAAGAGTATATGTACTATGATATTTGGGGATATCACTTGACGGGGCTTCATTT 1430
Query 1457 GATGGATAAGTTAAAGGAAGTGAGAGAAGGTAAAAGCTCAGGTTTTGATGGAGAGGAGTG 1516
|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1431 GATGGATAAGTTCAAGGAAGTGAGAGAAGGTAAAAGCTCAAGCTTTGATGGAGAGGAGTG 1490
Query 1517 TGAGAGTTTCTTTGTTAA---GGGTCCTCAGAACTTGTTAGCAGACTCTCACACCAGGTT 1573
|||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||| ||
Sbjct 1491 TGAGAGTTTCTTTGTTAATAAGGGTCCTCATAACTTGTTTGCAGACTCTCATACCAGATT 1550
Query 1574 TGTAAGTTTCTGTAACCAATGGG 1596
|||||||||||| ||||||||||
Sbjct 1551 TGTAAGTTTCTGCAACCAATGGG 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5