BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66920.1
Length=2037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230 2590 0.0
Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1 228 1e-58
Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237 217 3e-55
> Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230
Length=1632
Score = 2590 bits (1402), Expect = 0.0
Identities = 1552/1626 (95%), Gaps = 4/1626 (0%)
Strand=Plus/Plus
Query 158 AAAAACAACATCCTTGCTTAATCATCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 217
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 9 AAAAACAGCATCCTTGCTTAATCCTCTTCTTCTTCTTGGAGCTTTGACTCTTTTGAGCAG 68
Query 218 TTTGGTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACTTGGACTGTGACTTATGG 277
|||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 69 TTTGTTGATAGTGAAAGGAGAAAGCCCTTACAAGTTTTACACCTGGACTGTAACTTATGG 128
Query 278 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 CATTATCTCTCCTCTTGGTGTTCCTCAACAGGTTATTCTCATCAATGGTCAGTTTCCTGG 188
Query 338 TCCAAAACTTGAAGTTGTGACCAACGACAACATCATCCTCAACCTCATCAACAAACTTGA 397
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 189 TCCAAAGCTTGATGTTGTGACCAATGACAACATCATCCTCAACCTCATCAACAAACTTGA 248
Query 398 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAGAGGAAGAACTCATGGCAAGATGG 308
Query 458 TGTTTTGGGAACAAACTGTCCGATCCAACCAAACTCAAACTTCACTTACAAATTCCAAAC 517
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 309 TGTTTTGGGAACAAACTGTCCGATCCAACCGAACTCAAACTTCACTTACAAATTCCAAAC 368
Query 518 CAAAGATCAGATCGGAACTTTCAACTACTTCCCTTCCACTGCTTTTCACAAAGCCGCCGG 577
|||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 369 CAAAGATCAGATTGGAACTTTCCATTACTTCCCTTCCACCGCTTTTCACAAAGCCGCCGG 428
Query 578 TGGATTCGGAGCCATCAATGTCTACGCAAGACCTGGAATTCCAATCCCTTACCCTCTCCC 637
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 429 TGGATTCGGAGCCATCAATGTCTATGCAAGACCTGGAATCCCAATCCCTTACCCTCTCCC 488
Query 638 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AACCGCAGATTTCACTTTACTCGTTGGTGATTGGTTCAAAACCAACCACAAAACGCTTCA 548
Query 698 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTTATAAATGGACA 757
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 549 ACAGCGTTTGGATTCTGGTGGGGTTCTTCCATTTCCCGATGGGATGCTCATAAATGGACA 608
Query 758 AACCCAATCAACGTTTTCAGGCGACCAAGGGAAGACTTACATGTTGAGAATCTCCAATGT 817
||| ||| |||| |||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 609 AACTCAAACAACATTTTCAGGCGACCAAGGGAAGACTTATATGTTCAGAATCTCTAATGT 668
Query 818 TGGGTTATCAAGCACTTTCAATTTCAGAATCCAAGGCCATACAATGAAAGTAGTTGAAGT 877
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 669 TGGGTTATCAAGCAGTTTCAATTTCAGAATCCAAGGACATACAATGAAAGTAGTTGAAGT 728
Query 878 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCACGTTGGCCAGTC 937
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 729 TGAAGGCTCTCATGTTATTCAAACTGATTATGATTCTCTTGACATTCATGTTGGCCAGTC 788
Query 938 TTTAGCAGTTCTTGTTACTTTAAACCAATCTCCTAAAGATTATTACATCGTTGCAAGCAC 997
|||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 789 TTTAGCTGTTCTTGTTACTTTAAACCAATCTCCCAGAGATTATTACATCGTCGCAAGCAC 848
Query 998 CCGGTTCATAAGAAGCAA-GCTTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCTCGCG 1056
||||||| | |||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 849 CCGGTTCGTTAGAAGCAAAG-TTTCTGTTATGGGTTTGTTGCGTTATTCTAACTCCCGCG 907
Query 1057 TCCCAGCTTCTGGTGATCCTCCCGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 1116
|| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 908 TCTCAGCTTCTGGTGATCAGCCTGCTCTTCCACCTGGAGAGCTTGTTTGGTCCATGAGAC 967
Query 1117 AAGCTAGAACCTTCAGATGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1176
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 AAGCTAGAACATTCAGGTGGAACTTAACAGCAAATGCAGCTAGACCAAACCCTCAAGGAT 1027
Query 1177 CTTTCCACTATGGAATGATCAGTCCAACAAAGACATTTGTCTTCTCAAATTCAGCTCCTT 1236
| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1028 CATTCCACTATGGAATGATCACTCCAACAAAGTCATTTGTCTTCTCAAATTCAGCTCCTT 1087
Query 1237 TGATTAATGGGAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAAATCAGAGACGC 1296
| |||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1088 TAATTAATGGAAAGCAAAGATATGCAGTCAATGGAGTCTCTTATGTGAACTCAGTGACGC 1147
Query 1297 CTCTTAAACTCGCTGATCACTTTGGCATCTCAGGAGTTTTCAGCACCAATGCCATTCAAA 1356
||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1148 CTCTTAAACTCGCTGATCACTTTGGAATCAGTGGAGTTTTCAGCACCAACGCCATTCAAA 1207
Query 1357 GCGTCCCATCAAACTCTCCGCCAACAGTTGCAACATCAGTTGTTCAAACATCTCACCATG 1416
||||||| || |||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 1208 GCGTCCCTTCTAACTCTCCTCCAACTGTTGCAACATCAGTTGTTCAAACATCTCTCCATG 1267
Query 1417 ACTTCCTTGAAATTGTATTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGATG 1476
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1268 ATTTCCTTGAAATTGTGTTTCAGAACAATGAGAAGTCAATGCAGTCTTGGCATCTTGACG 1327
Query 1477 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GATATGACTTCTGGGTCGTTGGATTTGGTTCTGGACAATGGACACCTGCAAAAAGATCAC 1387
Query 1537 T-TCACAATCTTGTTGATGCTCTGACCAGACACACAACTCAGGTCTACCCAGAGTCTTGG 1595
| | ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1388 TCT-ACAATCTTGTTGATGCTCTTACCAGACACACTACTCAGGTGTACCCAGAGTCTTGG 1446
Query 1596 ACAACAATCTTAGTGTCTTTAGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1655
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1447 ACAACAATCTTGGTGTCTTTGGACAATCAAGGGATGTGGAATATGAGATCAGCGATATGG 1506
Query 1656 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATTCAGTACAGAGTCTT 1715
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 1507 GAAAGACAATATTCAGGACAACAGTTTTATCTCAAAGTATGGAATCCAGTGCAGAGCCTT 1566
Query 1716 GCCAATGAATACAATCCTCCTGACAATCTTCAACTCTGTGGCAAAGCTGTTGGACGACAT 1775
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1567 GCCAATGAATACAATCCTCCTGACAATCTTCAATTCTGTGGCAAAGCTGTTGGAAGACAC 1626
Query 1776 GTTTAG 1781
|||||
Sbjct 1627 CTTTAG 1632
> Ahg490933 jgi|Araly1|490933|fgenesh2_kg.7__366__AT4G37160.1
Length=1627
Score = 228 bits (123), Expect = 1e-58
Identities = 253/314 (81%), Gaps = 16/314 (5%)
Strand=Plus/Plus
Query 251 GTTTTACACTTGGACTGTGACTTATGGCATTATC--TCTCCTCTTGGTGTTCCTCAACAG 308
||| |||||||||||||| ||||| |||| | | | |||||| |||||||||||| ||
Sbjct 93 GTTCTACACTTGGACTGTTACTTACGGCA-CA-CGATATCCTCTAGGTGTTCCTCAAGAG 150
Query 309 GTTATTCTCATCAATGGTCAGTTTCCTGGTCCA-AAACTTGAAGTTGTGACCAACGACAA 367
|| ||||| |||||||| ||||| ||||||||| | |||||| || || ||| ||||
Sbjct 151 GTCATTCTTATCAATGGACAGTTCCCTGGTCCAGCGA-TTGAAGCGGTCACAAACAACAA 209
Query 368 CATCATCCTCAACCTCATCAACAAACTTGACCAGCCTTTCCTC-TTGACCTGGAATGGGA 426
||| | | || ||||| ||||| || ||| |||| |||||| || ||||||||| |||
Sbjct 210 CATTGTTGTTAATCTCATTAACAAGCTCGACGAGCCATTCCTCATT-ACCTGGAAT-GGA 267
Query 427 -TTAAGCAGAGGAAGAAC-TCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCA 484
| ||||||||| || || || ||||||||||| || |||||||||||||||||||||||
Sbjct 268 GTGAAGCAGAGG-AGGACATCGTGGCAAGATGGAGTATTGGGAACAAACTGTCCGATCCA 326
Query 485 ACCAAACTCAAACTTCACTTACAAATTCCAAACC-AAAGATCAGATCGGAACTTTCAACT 543
||||||||| |||| |||||| | || ||| | |||||||| ||||| |||| || ||
Sbjct 327 ACCAAACTCGAACTGGACTTACCAGTTTCAA-CTTAAAGATCAAATCGGTACTTACA-CT 384
Query 544 -ACTTCCCTTCCAC 556
||||| |||||||
Sbjct 385 TACTTCGCTTCCAC 398
> Ahg320180 jgi|Araly1|320180|fgenesh1_pm.C_scaffold_4000237
Length=1626
Score = 217 bits (117), Expect = 3e-55
Identities = 245/306 (80%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 257 CACTTGGACTGTGACTTATGGCATTATCTCTCCTCTT-GGTGTTCCTCAACAGGTTATTC 315
|||||||||||| |||||||| | | |||||| || |||||||||||||||||||| |
Sbjct 96 CACTTGGACTGTTACTTATGGAACCAGATCTCCT-TTAGGTGTTCCTCAACAGGTTATAC 154
Query 316 TCATCAATGGTCAGTTTCCTGGTCC-AAAACTTGAAGTTGTGACCAACGACAACATCATC 374
| || ||||| |||||||||||||| || |||||| ||| || ||| | || ||| |
Sbjct 155 TTATTAATGGCCAGTTTCCTGGTCCTCCAA-TTGAAGGTGTAACAAACAATAATATCGTT 213
Query 375 CTCAACCTCATCAACAAACTTGACCAGCCTTTCCTCTTGACCTGGAATGGGATTAAGCAG 434
| || |||| ||||| |||||| | ||||||||| | ||||||||||| ||||| |||
Sbjct 214 GTTAATGTCATTAACAAGCTTGACGAACCTTTCCTCATCACCTGGAATGGAATTAAACAG 273
Query 435 AGGAAGAACTCATGGCAAGATGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAACTCA 494
|||| || || |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 274 AGGAGGATGTCGTGGCAAGACGGTGTTTTGGGAACAAACTGTCCGATCCAACCAAAATCG 333
Query 495 AACTTC-ACTTACAAATTCCAAACC-AAAGATCAGATCGGAACTT-T-CAACTACTTCCC 550
|| || |||||| | || ||| | ||||| || ||||| |||| | || ||||| |
Sbjct 334 AA-TTGGACTTACCATTTTCAA-CTTAAAGACCAAATCGGTACTTATACA--TACTTTGC 389
Query 551 TTCCAC 556
||||||
Sbjct 390 TTCCAC 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76599482695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5