BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67030.1 Length=2385 Score E Sequences producing significant alignments: (Bits) Value Ahg496897 jgi|Araly1|496897|fgenesh2_kg.8__2713__AT5G67030.1 3485 0.0 > Ahg496897 jgi|Araly1|496897|fgenesh2_kg.8__2713__AT5G67030.1 Length=2278 Score = 3485 bits (1887), Expect = 0.0 Identities = 2178/2312 (94%), Gaps = 46/2312 (2%) Strand=Plus/Plus Query 6 CCTCcttcttcttcaaaccaatttcttcttcttcttct-ctC-A-GGTTTGAGTCTGAGG 62 ||||||||||||||||||| |||||||||||||||||| ||| | ||| ||||| ||| Sbjct 1 CCTCCTTCTTCTTCAAACC-ATTTCTTCTTCTTCTTCTCCTCTATTGTTCGAGTCAGAGT 59 Query 63 CATCACAACAGATAAAGTCTTGAACTTTGATCAAGAATTCTAAACGGAGTTTTTGCTCTT 122 ||||| |||||||||||||||| | ||| | |||||| ||||||| | || Sbjct 60 CATCATAACAGATAAAGTCTTG-A-TTT--T--TGAATTCCAAACGGA------G---TT 104 Query 123 CTCGTCGGTGAAAGAAAAATCGAGATGGGTTCAACTCCGTTTTGCTACTCTATCAATCCA 182 | | | | |||||||||||||||||||| ||||||||| || ||||||||| Sbjct 105 -T--T---T------ACAATCGAGATGGGTTCAACTCTGTTTTGCTATTCGATCAATCCA 152 Query 183 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCTGTTTCTAAACAGTTT 242 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 153 TCTCCATCAAAGCTTGATTTCACGAGGACCCATGTGTTTAGTCCCGTTGCTAAACAGTTT 212 Query 243 TACTTAGATTTATCATCGTTTTCCGGAAAA-C--CCGGAGGAGTATCTGGGTTTAGGAGC 299 |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| Sbjct 213 TACTTAGATTTATCATCGTTTTCCGGAAAATCTGGTGGAGGATTATCTGGGTTTAGGAGC 272 Query 300 CGTCGAGCTTTGCTCGGAGTAAAGGCGGCGACGGCGTTAGTTgagaaggaggagaagaga 359 || | || || ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 273 CGGAAAACTCTGGTCGGAGTAAAGGCGGCGACGGCGTTGGTTGAGAAGGAGGAGAAGAGA 332 Query 360 gaggcggtgacggagaagaagaagaaATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 419 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 333 GAGGCGGTGCCGGAGAAGAAGAAGAAATCGAGGGTTTTAGTTGCCGGAGGTGGAATCGGA 392 Query 420 GGATTGGTGTTTGCTTTAGCGGCTAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAGAAA 479 || ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 393 GGTTTGGTGTTTGCTTTAGCTGCCAAGAAGAAAGGATTCGATGTGTTAGTGTTTGAAAAA 452 Query 480 GATTTGAGTGCTATAAGAGGAGAAGGAAAATACAGAGGCCCGATTCAAATACAGAGCAAC 539 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 453 GATTTGAGTGCTATAAGAGGAGAAGGACAATACAGAGGTCCGATTCAAATACAGAGCAAC 512 Query 540 GCTTTAGCTGCTTTGGAAGCTATTGATATTGAAGTTGCTGAACAAGTTATGGAAGCTGGG 599 |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 513 GCTTTAGCTGCTTTGGAAGCTATTGATACTGATGTTGCTGAACAAGTTATGGAAGCTGGT 572 Query 600 TGTATCACTGGTGATCGGATTAACGGTCTCGTTGATGGTATCTCTGGTACTTGGTATGTA 659 ||||| || ||||||||||||||||||||||| || ||| ||||||||| ||||||||| Sbjct 573 TGTATTACCGGTGATCGGATTAACGGTCTCGTCGACGGTGTCTCTGGTAGTTGGTATGTC 632 Query 660 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTAGAGTAATTAGT 719 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 633 AAGTTTGATACTTTCACTCCTGCGGCGTCACGGGGACTTCCTGTGACTCGAGTAATTAGT 692 Query 720 AGAATGACTCTGCAGCAGATTCTAGCACGTGCGGTTGGAGAAGATGTGATTAGAAACGAG 779 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 693 AGAATGACTCTGCAGCAGATTCTAGCACGCGCAGTTGGAGAAGATGTGATTAGAAACGAG 752 Query 780 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTTACTGTGGTACTCGAGAATGGT 839 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 753 AGTAATGTTGTTGATTTTGAAGATTCTGGAGATAAGGTAACTGTGGTGCTCGAGAATGGT 812 Query 840 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 813 CAACGCTATGAAGGTGATCTGCTTGTGGGTGCAGATGGCATTTGGTCTAAGGTGAGAAAT 872 Query 900 AATTTGTTTGGCCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATTGCA 959 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 873 AATTTGTTTGGTCGTAGTGAAGCTACTTATTCAGGCTACACTTGTTACACGGGGATCGCA 932 Query 960 GATTTTATACCAGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACACAAACAG 1019 |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 933 GATTTTGTACCTGCGGATATCGAGTCTGTTGGCTACCGGGTTTTCTTGGGACATAAACAG 992 Query 1020 TACTTTGTTTCTTCGGATGTTGGTGGTGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1079 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 993 TACTTTGTTTCTTCTGATGTTGGTGGAGGAAAAATGCAATGGTATGCATTTCACGAGGAA 1052 Query 1080 CCAGCTGGTGGGGCTGATGCTCCAAATGGTATGAAGAAAAGGTTGTTTGAAATATTTGAC 1139 ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1053 CCAGCTGGTGGGGTTGATACTCCAAATGGTATGAAGAAAAGATTGTTTGAAATATTTGAC 1112 Query 1140 GGTTGGTGCGACAATGTACTCGACTTGTTGCATGCGACTGAGGAGGAAGCCATTCTGAGA 1199 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1113 GGTTGGTGCGACAATGTACTCGACTTGTTACATGCGACTGAGGAGGATGCCATTCTGAGA 1172 Query 1200 AGAGATATTTATGATAGAAGTCCTGGTTTTACTTGGGGTAAAGGGCGTGTTACGCTGCTC 1259 |||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1173 AGAGATATCTATGATAGAAGTCCTAGTTTTACTTGGGGTAAAGGTCGTGTTACGCTGCTC 1232 Query 1260 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 GGGGATTCTATCCATGCGATGCAGCCAAATATGGGTCAAGGTGGATGCATGGCCATTGAG 1292 Query 1320 GATAGTTTTCAACTAGCATTGGAGCTTGATGAAGCATGGAAACAGAGTGTTGAAACGACT 1379 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | | Sbjct 1293 GATAGTTTTCAACTAGCATTGGAGCTTGAAGAAGCATGGAAACAGAGTGTTGGAACTAAT 1352 Query 1380 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAGGAATCTAGAAGACTGAGAGTC 1439 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1353 ACACCTGTTGATGTTGTTTCCTCTTTGAAAAGATATGAAGAATCTAGAAGACTCAGAGTC 1412 Query 1440 GCTATTATCCATGCAATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1499 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 GCTATTATCCATGGGATGGCGAGGATGGCTGCAATTATGGCTTCCACTTACAAAGCATAC 1472 Query 1500 TTAGGTGTTGGGCTTGGTCCTCTGTCTTTCTTGACAAAGTTTAGAGTACCACATCCAGGA 1559 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 1473 TTAGGTGTTGGGCTTGGTCCTCTTTCTTTCTTGACAAAGTTTAGAGTACCGCATCCCGGA 1532 Query 1560 AGAGTTGGTGGTAGATTCTTCGTTGACATTGCTATGCCATCGATGCTTGACTGGGTCCTT 1619 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1533 AGAGTTGGTGGGAGATTCTTCGTTGACATTGCTATGCCATTGATGCTTGACTGGGTCCTT 1592 Query 1620 GGAGGTAACAGTGAAAAACTCCAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1679 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1593 GGAGGTAACAGTGAAAAACTCGAAGGAAGGCCACCTAGTTGCAGACTCACTGACAAAGCC 1652 Query 1680 GATGACCGGCTTCGAGAGTGGTTTGAAGATGACGATGCTCTTGAACGTACTATAAAGGGA 1739 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1653 GATGATCGGCTTCGAGAGTGGTTTGAAGATGACGACGCTCTTGAACGCACTATAAAGGGA 1712 Query 1740 GAATGGTATCTAATTCCACACGGCGACGATTGTTGCGTTTCGGAAACATTATGTCTAACC 1799 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1713 GAATGGTATCTAATTCCACACGGCGAAGATTGTTGTGTTTCGGAAACATTATGTCTAACC 1772 Query 1800 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1859 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1773 AAAGATGAAGATCAACCTTGCATCGTCGGAAGCGAACCAGATCAAGATTTTCCTGGAATG 1832 Query 1860 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1833 CGCATTGTGATCCCTTCGTCTCAGGTTTCGAAGATGCATGCTCGTGTGATTTACAAAGAC 1892 Query 1920 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1979 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1893 GGAGCTTTCTTCTTGATGGATCTTCGAAGCGAACACGGAACCTATGTGACCGATAACGAA 1952 Query 1980 GGAAGAAGATATAGAGCAACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2039 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1953 GGAAGAAGATATAGAGCGACACCGAATTTTCCCGCGCGGTTTAGATCGTCCGACATCATC 2012 Query 2040 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2099 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2013 GAGTTTGGTTCAGATAAGAAGGCGGCGTTTAGGGTGAAAGTAATCAGGAAAACTCCGAAA 2072 Query 2100 TCGACGAGGAAGAATGAGAGTAACAACGATAAATTACTTCAGACAGCTTGAAATAAGTAA 2159 |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 2073 TCGACGAGGAAGAATGAGAGTAAC---GATAAATTACTTCAGACAGCTTGAAATTAGTAA 2129 Query 2160 ACCGATGGTGAAATTAAGTAATTTTAATCGGTTTGGCAGATAATTTGAGTAGTAATTTTC 2219 |||||||||||||||||||| ||||| ||||||||||||||| |||| ||||| |||||| Sbjct 2130 ACCGATGGTGAAATTAAGTA-TTTTA-TCGGTTTGGCAGATATTTTGTGTAGTCATTTTC 2187 Query 2220 TCAAAAGaaaaaaaa-----TCTGCTTTCAGCTATTCCTTGCATGACAATGTATATATAG 2274 ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 2188 TCAAAAGAAAAAAAAAAAAATCTGCTTTCAGCTATTCCTTGCATTACAATGTATATATAG 2247 Query 2275 GTCTGAAACAAAAT-ATAAATTATACAAGACA 2305 | ||||||||||| |||| | |||||||||| Sbjct 2248 GCCTGAAACAAAAAGATAAGT-ATACAAGACA 2278 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89854887955 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5