BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67180.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358841 jgi|Araly1|358841|fgenesh1_pg.C_scaffold_8002628 1646 0.0
Ahg496882 jgi|Araly1|496882|fgenesh2_kg.8__2698__AT5G67170.2 117 3e-25
> Ahg358841 jgi|Araly1|358841|fgenesh1_pg.C_scaffold_8002628
Length=1053
Score = 1646 bits (891), Expect = 0.0
Identities = 1012/1067 (95%), Gaps = 22/1067 (2%)
Strand=Plus/Plus
Query 316 ATGTGGAACCTTAACGACTCACCCGATCATCACGAAGAATCCGACAGTAGAGGGAATCCG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGAACCTTAACGACTCACCCGATCATCACGAAGAATCCGACAGTAGAGGGAATCCG 60
Query 376 GTCGGACACGTGTCAAACGGGATGAGTCAATCTG-CAACGTGGCTACCGTTTGTGCTTCC 434
||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||
Sbjct 61 TTCGGACACGTGTCAAACGGGACGAGTCAATCTGTC-ACGTGGCTACCGTCTGTGCTTCC 119
Query 435 GGTGACCAGGAATTTCTTTCCGGCTCAAAGCATGGAACCGGGAGTTCGTTGGTCCGGTTT 494
||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 120 GGTGACCCGGAATTTCTTTCCGGCTCGAAGCATGGAACCGGGAGTTCGATGGTCCGGTTT 179
Query 495 CAATAGTGTCGGTAAGTCGGATCCAAGCGGATCGGGTCGACCAG-A-A----GAGCCGGA 548
|||||||||||||||||||||||| ||||| ||||||||||||| | | ||||||||
Sbjct 180 CAATAGTGTCGGTAAGTCGGATCCGAGCGGGTCGGGTCGACCAGAAGAGGCGGAGCCGGA 239
Query 549 GATATCACCGCCGATAAAGAAGAGCCGACGTGGTCCTCGCTCACGTAGCTCTCAGTATCG 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATATCACCGCCGATAAAGAAGAGCCGACGTGGTCCTCGCTCACGTAGCTCTCAGTATCG 299
Query 609 AGGAGTTACGTTTTACCGACGAACCGGAAGATGGGAGTCACATATTTGGGACTGTGGGAA 668
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGGAGTTACGTTTTACCGACGAACAGGAAGATGGGAGTCACATATTTGGGACTGTGGGAA 359
Query 669 GCAAGTGTACTTAGGTGGATTTGACACTGCACATGCTGCTGCTCGAGCCTATGATCGAGC 728
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GCAAGTGTACTTAGGTGGATTTGACACAGCACATGCTGCTGCTCGAGCCTATGATCGAGC 419
Query 729 GGCGATTAAATTCAGAGGTGTAGATGCAGATATTAATTTCGACATTGAAGACTACCTTGA 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 420 GGTGATTAAATTCAGAGGTGTAGATGCAGATATTAATTTCGACATTGAAGACTACGTGGA 479
Query 789 CGATTTGAAACAGATGGGAAATTTGACAAAGGAAGAGTTTATGCATGTACTTAGAAGGCA 848
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 480 CGATTTGAAACAGATGGGCAATTTGACCAAGGAAGAGTTTATGCATGTTCTTAGAAGGCA 539
Query 849 AAGCACTGGGTTTCCAAGAGGCAGTTCTAAATACAGAGGTGTTACTTTGCACAAATGTGG 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGCACTGGGTTTCCAAGAGGCAGTTCTAAATACAGAGGTGTTACTTTGCACAAATGTGG 599
Query 909 AAGATGGGAGTCACGTTTGGGTCAATTCCTCAACAAAAAGTACGTTTATTTGGGTCTCTT 968
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 AAGATGGGAGTCTCGTTTGGGTCAATTTCTCAACAAAAAGTACGTTTATTTGGGTCTCTT 659
Query 969 TGATACCGAGATTGAAGCTGCTAGAGCTTATGATAAAGCGGCAATAAAGTGTAATGGGAA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATACCGAGATTGAAGCTGCTAGAGCTTATGATAAAGCGGCAATAAAGTGTAATGGGAA 719
Query 1029 AGACGCTGTTACCAATTTTGACCCTAAAGTATACGAGGAAGAAGAAGATCTTAGCTCAGA 1088
|||||||||||||||||| |||||||||||||| |||||||| | |||||| ||||
Sbjct 720 AGACGCTGTTACCAATTTCGACCCTAAAGTATATGAGGAAGA-G-----CTTAGCCCAGA 773
Query 1089 GACGACGAGGAACGGTCATAATCTTGGTCTAAGTCTAGGAGAATCAT-CATCTGAAGAGT 1147
|||||||||||| ||||||||||||| ||||||| ||||||||||| | || |||||||
Sbjct 774 GACGACGAGGAATGGTCATAATCTTGATCTAAGTTTAGGAGAATCAAAC-TCGGAAGAGT 832
Query 1148 TTAGACTCAAGTCTGATATTGCAAGCATAAGAAGTAGGATTAGAGATGAGGAGAGATTAT 1207
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGGACTCAAGTCTGATATTGCGAGCATAAGAAGTAGGATTAGAGATGAGGAGAGATTAT 892
Query 1208 TAGGGAGCGATCTATCGCTAGCAATGATGACGACGACTGTCAGATCGGAAAAGCAGCAAT 1267
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 893 TAGGGAGAGATCTATCGCTAGCAATGATGACGACGACTGTCAGATCGGAAAAGCA--AA- 949
Query 1268 CGGACGGTGGAGGAAATCGAGTGGTGGGAATGGCAGCATCATCAGGATTCTCTCCTCAAC 1327
| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 950 CAGACGGTGGAGGAAATCGAGTGG-G--AATGGTAGCATCATCAGGATTCTCTCCTCAAC 1006
Query 1328 CTTCCCCTTACCGCATTCCTCGCACCTTCCACTTCTCTCGTCCCTGA 1374
||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1007 CTTCCCCTTACCGCATTCCTCACACCTTTCACTTCTCTCGTCCCTGA 1053
> Ahg496882 jgi|Araly1|496882|fgenesh2_kg.8__2698__AT5G67170.2
Length=1358
Score = 117 bits (63), Expect = 3e-25
Identities = 72/76 (95%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 1429 CAAGTTATGCTTTAATGAATTTGAGTTA-TTCTCGAGCTATTTTTGGGCTCTGTAATACA 1487
|||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1358 CAAGCTATGCTTTAAAGAATTTGAGTTATTTCTCGAGCTATTTTTGGGCTCTGTAATACA 1299
Query 1488 TATATGTTCTTGAGTA 1503
|||||||||| |||||
Sbjct 1298 TATATGTTCTCGAGTA 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5