BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67250.1
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951497 jgi|Araly1|951497|scaffold_803384.1 2499 0.0
Ahg485366 jgi|Araly1|485366|fgenesh2_kg.5__1358__AT3G50080.1 789 0.0
> Ahg951497 jgi|Araly1|951497|scaffold_803384.1
Length=1645
Score = 2499 bits (1353), Expect = 0.0
Identities = 1559/1654 (94%), Gaps = 32/1654 (2%)
Strand=Plus/Plus
Query 55 CGAAACCATTCGGTTGGTGATGGGCCAAGCGCCGTCGTCTACGGCGGAATCGAACGGACG 114
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 CGAAACCATTCGG-TGGTGATGGGCCAAGCGCCGTCGTCTACGGCGGAATCGAACGGACG 61
Query 115 AGAG-TTAGATTTGAGGTTATGGTCTCCGGTGATTGTTGCTGGAGGTGAATCGATGGCTG 173
|||| || |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 62 AGAGATT-GATTTGAGGTTATGGTCTCCGGTGATTGTTGCTGGAGGAGAATGGATGGCTT 120
Query 174 TGGGGAATGT--T----G-T-G-GATCGGGATTTCACCGGAGATCTGCCGGATGAGTGTT 224
|||| ||||| | | | | ||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGGGAAATGTCGTGGCGGTTAGAGATCGGGATTTCACCGGAGATCTACCGGATGAGTGTT 180
Query 225 TAGCTCATGTGTTTCAGTTTCTTGGAGCTGGAGATCGGAAGCGATGCTCTCTTGTTTGTA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAGCTCATGTGTTTCAGTTTCTTGGAGCTGGAGATCGGAAGCGATGCTCTCTTGTTTGTA 240
Query 285 AACGGTGGTTGCTCGTCGACGGTCAGAGTCGTCATCGGTTATCTCTAGATGCTAAGGATG 344
||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 241 AACGGTGGTTGTTCGTTGACGGTCAGAATCGTCATCGGTTATCTCTTGATGCTAAGGATG 300
Query 345 AGATC-TCCTCTTTCCTTACCTCTATGTTCAATCGATTCGATTCGGTGACGAAGCTTGCT 403
||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 301 AGATCTTCC-CTTTCCTGACTTCTATGTTCAATCGATTCGATTCGGTGACTAAGCTTGCT 359
Query 404 CTCCGATGTGATCGGAAGTCTGTTAGCTTGAGCGATGAAGCTTTGGCTATGATCTCTGTT 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCCGATGTGATCGGAAGTCTGTTAGCTTGAGCGATGAAGCTTTGGCTATGATCTCTGTT 419
Query 464 CGTTGTTTGAATCTGACTCGTGTTAAGCTTCGTGGTTGTCGCGAGATTACGGATCTGGGA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTTGTTTGAATCTGACTCGTGTTAAGCTTCGTGGTTGTCGCGAGATTACGGATCTGGGA 479
Query 524 ATGGAAGACTTCGCTAAGAATTGTAAAAATCTTAAGAAGCTATCTGTTGGATCTTGCAAT 583
|||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 ATGGAAGAGTTTGCTAGGAATTGTAAAAATCTAAAGAAGCTATCTGTTGGATCTTGCAAT 539
Query 584 TTCGGAGCTAAAGGCGTGAACGCGATGCTCGAACATTGTAAGCTTCTGGAGGAATTGTCG 643
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTTGGAGCTAAAGGCGTGAACGCGATGCTCGAACATTGTAAGCTTCTGGAGGAATTGTCG 599
Query 644 GTGAAGCGACTTCGAGGAATTCATGAAGCAGCTGAGTTGATTCACCTACCTGATGATGCT 703
|||||||||||||||||||||||||||||||| |||||||||||||| |||| || | |
Sbjct 600 GTGAAGCGACTTCGAGGAATTCATGAAGCAGCCGAGTTGATTCACCTGCCTGCTG--G-T 656
Query 704 TCATCTTCTTCGCTCAGGTCTATTTGCTTGAAGGAGCTCGTTAATGGCCAGGTATTTGAA 763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCATCTTCTTCGCTCAGGTCGATTTGCTTGAAGGAGCTCGTTAATGGCCAGGTATTTGAA 716
Query 764 CCGTTGCTTGCTACTACAAGAACACTGAAAACACTGAAAATCATTCGTTGTTTGGGTGAT 823
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 717 CCATTGGTTGCTACTACAAGAACACTGAAAACACTTAAAATCATTCGTTGTTTGGGTGAT 776
Query 824 TGGGATAAAGTTCTTCAGATGATTGCAAATGGTAAGAGTTCTTTAAGTGAAATTCACTTA 883
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 777 TGGGATAGAGTTCTTCAGATGATTGGAGATGGTAAGAGTTCTTTAAGTGAAATTCACCTA 836
Query 884 GAGAGGCTCCAAGTTAGTGACATTGGGCTATCTGCGATATCTAAATGCTCAAATGTTGAG 943
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 GAGAGGCTCCAAGTGAGTGACATTGGGCTATCTGCGATATCTAAATGCTCAAATGTAGAG 896
Query 944 ACATTGCATATAGTGAAAACTCCAGAATGTTCAAACTTTGGTCTGATTTATGTAGCTGAG 1003
||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct 897 ACATTGCATATAGTGAAAACTCCAGAATGCTCAAACTATGGTCTGATTAATGTAGCTGAG 956
Query 1004 AGATGTAAGCTGCTGAGGAAGCTTCATATTGATGGTTGGAGGACTAATAGGATAGGTGAT 1063
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 957 AGATGTAAGCTGCTGAGGAAACTTCATATTGATGGTTGGAGGACTAATAGGATTGGTGAT 1016
Query 1064 GAAGGTTTACTT-TCTGTAGCCAAACACTGTTTAAACTTGCAAGAACTTGTGCTGATTGG 1122
|| ||| | | | |||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1017 GAGGGTCT-CATGTCTGTAGCTAAACACTGCTTAAACTTACAAGAACTTGTGCTGATTGG 1075
Query 1123 TGTTAATGCAACACATATGAGTTTAGCAGCCATTGCTTCAAACTGTGAGAAACTCGAACG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1076 TGTTAATGCAACACATATGAGTTTAGCAGCCATTGCTTCAAACTGTGAGAAGCTTGAACG 1135
Query 1183 GTTAGCACTTTGCGGAAGTGGAACAATAGGCGATACAGAGATTGCTTGCATCGCTAGGAA 1242
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 ATTAGCACTTTGTGGAAGTGGAACAATAGGCGATACAGAGATCGCTTGCATCGCTAGGAA 1195
Query 1243 ATGTGGAGCATTGAGGAAATTCTGTATTAAAGGATGTCCTGTTTCGGATCGAGGGATTGA 1302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 ATGTGGAGCATTGAGGAAATTCTGTATCAAAGGATGTCCTGTTTCGGATCGAGGGATTGA 1255
Query 1303 GGCGCTCGCTGTTGGTTGTCCTAATCTGGTTAAATTGAAGGTGAAGAAATGTAAAGTTGT 1362
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1256 GGCGCTCGCTGTGGGTTGTCCTAATCTGGTGAAATTGAAGGTGAAGAAATGTAAAGTGGT 1315
Query 1363 GACTGGAGAGATTGGAGATTGGCTGCGTGAACAAAGGAGGACACTAGTGGTGAGTATGGA 1422
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 AACTGGAGAGATTGGAGATTGGCTGCGTGAACAAAGGAGGACACTTGTGGTGAGTATGGA 1375
Query 1423 TGGTGATGAAACCGAAGCAGTGGTGGTGGTGGATGGTGAGGTTGAAACCGTTGTGGAGGA 1482
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1376 TAGTGATGAAACCGAAGCGGTGGTGGTGGTGGATGGTGAGGTTGAAACCGTTGTCGAGGA 1435
Query 1483 GCCAAGGGTGGCTCAAGCAGGTGGAATTGTGGCAGAGATTGGTTCAAGTAAT-G-G-TGG 1539
||| ||||||| |||||||||||||||||||||||||||||||||| ||||| | | |||
Sbjct 1436 GCCGAGGGTGGTTCAAGCAGGTGGAATTGTGGCAGAGATTGGTTCAGGTAATAGTGGTGG 1495
Query 1540 ------TGGAGGAAGTAGATTAGCGATGATTAGGTCAAAGTTAGGGTTTCTTGCTGGAAG 1593
|||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1496 CAACAATGGAGGAAGTAGATTAGCAACGATTAGGTCAAAGTTAGGGTTTCTTGCTGGAAG 1555
Query 1594 AAACTTGGTAACTTGCACATTCAGAAGATGGTCTCACAATGATAATGCTAGTAGTTCTAC 1653
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 AAACTTGGTAACTTGCACATTCAGAAGATGGTCTCATAATGATAATGCTAGTAGTTCTAC 1615
Query 1654 TTGATCAGCTATAACTATGAAAGCGGTAATTGTC 1687
| || ||||||||||| ||| |||||||||||
Sbjct 1616 T-GA---GCTATAACTATAAAAACGGTAATTGTC 1645
> Ahg485366 jgi|Araly1|485366|fgenesh2_kg.5__1358__AT3G50080.1
Length=1652
Score = 789 bits (427), Expect = 0.0
Identities = 920/1150 (80%), Gaps = 66/1150 (6%)
Strand=Plus/Plus
Query 313 TCGTCATCGGTTATCTCTAGATGCTAAGGATGAGA-TCTCCTCTTTCCTTACC-TCTATG 370
|||||| || ||||| || |||||||| ||||| ||||| |||| ||| || | |||
Sbjct 219 TCGTCACCGTTTATCACTTGATGCTAAATCTGAGATTCTCC-CTTT-CTTGCCTTGTATC 276
Query 371 TTCAATCGATTCGATTCGGTGACGAAGCTTGCTCTCCGATGTGATCGGAAGTCTGTTAGC 430
|||||||| |||||||| || || ||||| ||||| || |||||||||| |||| |||||
Sbjct 277 TTCAATCGGTTCGATTCCGTAACAAAGCTCGCTCTTCGTTGTGATCGGAGGTCTTTTAGC 336
Query 431 TTGAGCGATGAAGCTTT-GGCTATGATCTCTG-TTCGTTGTTTGAATCTGACTCGTGTTA 488
||||||||||||||||| | | |||||||| | ||||||| | |||||||| ||| || |
Sbjct 337 TTGAGCGATGAAGCTTTAGTC-ATGATCTC-GATTCGTTGCTCGAATCTGATTCGAGTCA 394
Query 489 AGCTTCGTGGTTGTCGCGAGATTACGGATCTGGGAATGGAAGAC-TTCGCTAAGAAT-TG 546
||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||
Sbjct 395 AGCTTCGTGGTTGTCGCGAGATTACGGATCTAGGAATGGAAT-CGTTCGCTA-GAAACTG 452
Query 547 TAAAAATCTTAAG-AAGCTATC-TGTTGGATCTTGCAATTTCGGAGCTAAAGGCG-TGAA 603
|| || ||| || |||||||| ||| || ||||| |||||||| || ||||| | | ||
Sbjct 453 TAGGAA-CTTGAGGAAGCTATCGTGT-GGCTCTTGTAATTTCGGTGC-AAAGG-GATTAA 508
Query 604 -CGCGATGCTCGAACATTGTAAGCTTCTGGAGGAATTGTCGGTGAAGCGACTTC-GAGGA 661
||||||||| || ||||| ||| |||| ||||| || || |||||| || | | |||||
Sbjct 509 ACGCGATGCTTGAGCATTGCAAGGTTCTTGAGGAGTTATCTGTGAAGAGAAT-CAGAGGA 567
Query 662 ATTCATGAAGCAGCTGAGTTGATTCACCTACCTGATGATGCTTCATCTTCTTCGCTCAGG 721
||| ||||| |||||| ||| | | | ||| | ||| |||||||| || ||
Sbjct 568 ATTGATGAATTGGCTGAGCCAATT-A---AG--G-TGA-G-TTCGTCTTCTTCACTTAGA 618
Query 722 TCTATTTGCTTGAAGGAGCTCGTTAATGGCCAGGTATTTGAACCGTTGCTTGCTACTACA 781
| ||||| ||||||||||| |||||||| ||||||||||| | ||| ||||||| |||
Sbjct 619 ACGATTTGTTTGAAGGAGCTTGTTAATGGTGAGGTATTTGAATCTTTGGTTGCTACAACA 678
Query 782 AGAACACTGAAAACACTGAAAATCATTCGTTGTTTGGGTGATTGGGATAAAGTTCTTCAG 841
| | |||||| ||| | ||||||||||||||| ||||||||||||| ||||||| |
Sbjct 679 A---CTTTGAAAAAACTTAGAATCATTCGTTGTTTAGGTGATTGGGATAGAGTTCTTGAA 735
Query 842 ATGATTGCAAATGGTAAGAGTTCTTTAAGTGAAATTCA-CTTAGAGAGGCTCCAAGTTAG 900
|||| || | |||| || |||||||| | ||| ||||| || |||||||| ||||| ||
Sbjct 736 ATGAATGGAGATGGGAATAGTTCTTTGACTGAGATTCATCTG-GAGAGGCTTCAAGTGAG 794
Query 901 TGACATTGGGCTATCTGCG-ATATCTAAATGCTCAAATGTT-GAGACATTGCATATAGTG 958
||| |||| || |||| | ||||||||||| |||||| || ||||| ||||||||||||
Sbjct 795 TGATGTTGGACTCTCTG-GTATATCTAAATGTTCAAAT-TTAGAGACTTTGCATATAGTG 852
Query 959 AAAACTCCAGAATGTTCAAACTTT-GGTCTGATTTA-TGTAGCT-GAGAGATGTAAGCTG 1015
||||| || |||||||| || | | ||| | | || ||| | | |||||||||||| |
Sbjct 853 AAAACCCCTGAATGTTCGAA-TATAGGTTT-AGCTAGTGTTG-TAGAGAGATGTAAGTTA 909
Query 1016 CTGAGGAAGCTTCATATTGATGGTTGGAGGACTAATAGGATAGGTGATGAAGGTTT-ACT 1074
||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||| | |
Sbjct 910 CTGAGAAAGCTTCATATTGATGGTTGGAGGATTAAGAGGATCGGTGATGAAGGTTTGA-T 968
Query 1075 TTCTGTAGCCAAACACTGTTTAAACTTGCAAGAACTTGTGCTGATTGGTGTTAATGCAAC 1134
|||||||| || ||||| || || |||||||| ||||| || || |||||| |||| ||
Sbjct 969 GTCTGTAGCTAAGCACTGCTTGAATTTGCAAGAGCTTGTACTTATCGGTGTTGATGCGAC 1028
Query 1135 ACATATGAGTTTAG-CAGCCATTGCTTCAAACTGTGAGAAACTCGAACGGTTAGCACTTT 1193
||||||| || | |||| ||||||||||||||| |||| || ||||||||||| ||||
Sbjct 1029 GTATATGAGCTT-GTCAGCTATTGCTTCAAACTGTAAGAAGCTTGAACGGTTAGCTCTTT 1087
Query 1194 GCGGAAGTGGAACAATAGGCGATACAGAGATTGCTTGCATCGCT-AGGAAATGTG-GAGC 1251
| || ||||| || || || || || ||||||| ||| |||||| || ||||||| | ||
Sbjct 1088 GTGGGAGTGGTACGATTGGGGACACGGAGATTGGTTGTATCGCTGAG-AAATGTGTG-GC 1145
Query 1252 ATTGAGGAAATTCTGTATTAAAGGATGTCCTG-TTTCGGATCGA-GGGATTGAGGCGCTC 1309
|||||||||||||||| || ||||||| || |||| ||| | ||||| ||||| |
Sbjct 1146 GCTGAGGAAATTCTGTATCAAGGGATGTC-TGATTTCAGAT-GTCGGGATCAAGGCGTTG 1203
Query 1310 GCTGTT-GGTTGTCCTAATCTGGTTAAATTGAAGGTGAAGAAATGTAAAGTTG-TGACTG 1367
||| || || |||||||| ||||| ||| |||| ||||||||||||| | ||| | || |
Sbjct 1204 GCT-TTAGGCTGTCCTAAGCTGGTGAAACTGAAAGTGAAGAAATGTAGA-TTGGTTACAG 1261
Query 1368 GAGA-GATT-GGAGATTGGCTGCGTGAACAAAGGAGGACACTAGTGGTGAGTATGGATGG 1425
| || | || || || ||||||||||||| |||| ||| | ||||||||||||||||
Sbjct 1262 GTGAAG-TTAGG-GAATGGCTGCGTGAACGGAGGATGACGTTGGTGGTGAGTATGGATGA 1319
Query 1426 TGATGAAACC 1435
||||||||||
Sbjct 1320 TGATGAAACC 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73704624075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5