BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67300.1
Length=1985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951491 jgi|Araly1|951491|scaffold_803378.1 1491 0.0
Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1 730 0.0
Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1 292 5e-78
> Ahg951491 jgi|Araly1|951491|scaffold_803378.1
Length=959
Score = 1491 bits (807), Expect = 0.0
Identities = 900/946 (95%), Gaps = 2/946 (0%)
Strand=Plus/Plus
Query 81 AAAATCAATGGCTGATAGGATCAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCG 140
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAATCAATGGCTGATAGGATTAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCG 74
Query 141 TAGGCTTGTTGTTAAATACGGTCCAAGAAACTGGACAGTGATTAGCAAATCTATTCCCGG 200
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 75 TAGGCTTGTTGTTAAATACGGTCCGAGAAACTGGACTGTGATTAGCAAATCTATTCCCGG 134
Query 201 TAGATCGGGGAAATCGTGTCGTTTACGGTGGTGCAACCAGCTTTCGCCGCAAGTTGAGCA 260
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 TAGATCGGGAAAATCGTGTCGTTTACGGTGGTGCAACCAGCTTTCGCCGCAAGTTGAGCA 194
Query 261 TCGGCCGTTTTCGGCTGAGGAAGACGAGACGATCGCACGTGCTCACGCTCAGTTCGGTAA 320
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 195 CCGGCCGTTTTCGGCGGAGGAAGACGAGACGATCGCGCGTGCTCACGCTCAGTTTGGTAA 254
Query 321 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 314
Query 381 CTGGAACTCGACGCTCAAGAGGAAATGCGGCGGTTACGACCATCGGGGTTACGATGGTTC 440
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 315 CTGGAACTCGACGCTCAAGAGGAAATGCGGTGGTTACGACCATCGGGGTTTCGATGGTTC 374
Query 441 GGAGGATCATCGGCCGGTTAAGAGATCGGTGAGTGCGGGATCTCCACCTGTTGTTACTGG 500
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 375 GGAGGATCATCGGCCGGTTAAGAGATCGGTGAGTGCTGGATCTCCTCCTGTTGTTACTGG 434
Query 501 GCTTTACATGAGCCCAGGAAGCCCAACTGGATCTGATGTCAGTGATTCAAGTACTATCCC 560
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 435 GCTTTATATGAGCCCAGGAAGCCCAACTGGATCTGACGTCAGTGATTCAAGTACAATTCC 494
Query 561 GATATTACCTTCCGTTGAGCTTTTCAAGCCTGTGCCTAGACCTGGTGCTGTTGTGCTACC 620
||||||||| || ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 495 GATATTACCCTCTGTTGAGCTTTTCAAGCCGGTGCCTAGACCTGGTGCTGTTGTGTTACC 554
Query 621 GCTTCCTATCGAAACGTCGTCTTCTTCCGATGATCCACCGACTTCGTTAAGCTTGTCACT 680
|||||| || ||||||||||| ||||| | ||||||||||||||||||||| ||||||||
Sbjct 555 GCTTCCCATTGAAACGTCGTCGTCTTCTGCTGATCCACCGACTTCGTTAAGTTTGTCACT 614
Query 681 TCCTGGTGCCGACGTAAGCGAGGAGTCAAACCGTAGCCACGAGTCAACGAATATCAACAA 740
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 615 TCCTGGTGCTGACGTAAGCGAGGAGTCAAACCGTAGCCATGAGTCAACGAATATCAATAA 674
Query 741 CACCACTTCGAGCCGCCACAACCACAACAATACGGTGTCGTTTATGCCGTTTAGTGGTGG 800
|||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||| ||
Sbjct 675 CACCACTTCGAGCCGCCACAACAACAACAACACGGTGTCGTTTTTGCCTTTTAGTGGGGG 734
Query 801 GTTTAGAGGTGCGATTGAGGAAATGGGGAAGTCTTTTCCCGGTAACGGAGGCGAGTTTAT 860
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 735 GTTTAGAGGTGCGATTGAGGATATGGGGAAGTCTTTTCCCGGTAACGGCGGCGAGTTTAT 794
Query 861 GGCGGTGGTGCAAGAGATGATTAAGGCGGAAGTGAGGAGTTACATGACGGAGATGCA-AC 919
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 795 GGCGGTGGTGCAAGAGATGATTAAGGCGGAAGTGAGAAGTTACATGACGGAGATGCAGA- 853
Query 920 GGAACAATGGTGGCGGATTCGTCGGAGGATTCATTGATAATGGCATGATTCCGATGAGTC 979
| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 854 GAAACAATGGTGGTGGATTCGTCGGAGGATTCAAGGATAATGGCATGATTCCGATGAGTC 913
Query 980 AAATTGGAGTTGGGAGAATCGAGTAGACAAAGTGAGATTATTAGGA 1025
||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 914 AAATTGGAGTTGGGAGAATCGAGTAGAGAGAGTGAGATTTTTAGGA 959
> Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1
Length=1417
Score = 730 bits (395), Expect = 0.0
Identities = 491/537 (91%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 1292 TTAAAGAACAAGTTTGTCGAGGATTGGTAAAGACTTGCATTTGGCAACTAAAGGCACAGA 1351
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TTAAAGAACAACTTTGTCCAGGATTGGTAAAGACTTGCATTTGGCAACTAAAGGCACAGC 1357
Query 1352 TTTGGGCATGGTAAGACCCTTTCCTTCCGACATGTCAACGGCAACGTCATTGTCTCTCTC 1411
|||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 1356 TTTGGGCATGGTAATACCCCTTCCTTCCGACATGTCAACTGCCACGTCATTGTCTCTCTC 1297
Query 1412 CCAATCGAAACACTGGATCAATGAGCCTAAAGCTAAGCTCAGTACTAGTTGGGCCAGGCC 1471
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1296 CCAATCAAAACACTGGATCAATGAGCCTAAAGCTAAGCTCAGTACAAGTTGGGCCAGGCC 1237
Query 1472 CATACCAGGACATGCTCTCCTACCGATTCCGAAAGGCAGAAACTTACCACGATGGGTCTC 1531
|||||||||||||||||| || |||||||| ||||||||| ||||||||||||| |||||
Sbjct 1236 CATACCAGGACATGCTCTTCTGCCGATTCCAAAAGGCAGATACTTACCACGATGAGTCTC 1177
Query 1532 TGATTCAAACCTCTCTGGTTTGAAAGTTTCTGGGTCATC--CC-ATACATTTGGGTCTCT 1588
|||||||||||||||||||||||||| ||| |||||||| || |||| || ||||||||
Sbjct 1176 TGATTCAAACCTCTCTGGTTTGAAAGCTTCCGGGTCATCATCCCATACCTTCGGGTCTCT 1117
Query 1589 CTGAATAGCCCACGCATTGATAAATAGCCAGGTGCGACGTGGAATGTCAAATCCAGCGAC 1648
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1116 TTGAATAGCCCACGCATTGATAAATAACCAGGTGCCACGTGGAATGTCAAATCCAGCGAC 1057
Query 1649 TTCACAGTCAGTGGATGAAGCGTGTGGGACAAGTAAGGGCGCCGCCGGAAACAAACGAAG 1708
||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||| ||
Sbjct 1056 TTCACAGTCAGCGGATGAAGCGTGTGGGACAAGTAACGGCGCTGCCGGATACAAACGGAG 997
Query 1709 AGTCTCAGAGATCACATT-GTTGAGATAGGGACACTTGCCAGTATCTGATTCCTCAAACA 1767
|| |||||||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||
Sbjct 996 TGTTTCAGAGATCACATTTGTT-AGATACGGACACTTGCCGGTATCTGATTCCTCCAACA 938
Query 1768 CACGCCCTTCTTTCG-AAACCTCGTTTAGTTCCGTTTTGAGTTTCCTTAAAACTTCC 1823
|||||||||| || |||| | ||||| ||||||||| |||||| ||||| |||||
Sbjct 937 GACGCCCTTCTA-CGGAAACGTTGTTTACTTCCGTTTTCAGTTTCATTAAACCTTCC 882
> Ahg485364 jgi|Araly1|485364|fgenesh2_kg.5__1356__AT3G50060.1
Length=978
Score = 292 bits (158), Expect = 5e-78
Identities = 276/333 (83%), Gaps = 8/333 (2%)
Strand=Plus/Plus
Query 85 TCAATGGCTGATAG-GATCAAAGGTCCATGGAGTCCTGAAGAAGACGAGCAGCTTCGTAG 143
|||||||| ||| | | | |||||||||||||||| |||||||| |||||||| |||||
Sbjct 13 TCAATGGCGGATCGTG-TTAAAGGTCCATGGAGTCAAGAAGAAGATGAGCAGCTACGTAG 71
Query 144 GCTTGTTGTTAAATACGGTCCAAGAAACTGGACAGTGATTAGCAAATCTATTCCCGGTAG 203
| | || | ||||||||||| || || ||| | | |||||||||||| ||||| ||| |
Sbjct 72 GATGGTGGAGAAATACGGTCCGAGGAATTGGTCGGCGATTAGCAAATCGATTCCAGGTCG 131
Query 204 ATCGGGGAAATCGTGTCGTTTACGGTGGTGCAACCAGCTT-TCGCCGCAAGTTGAGCATC 262
||| || ||||||||| | ||||||||||| || ||| || || ||| | |||||||| |
Sbjct 132 ATCTGGTAAATCGTGTAGATTACGGTGGTGTAATCAG-TTATCTCCGGAGGTTGAGCACC 190
Query 263 GGCCGTTT-TCGGCTGAGGAAGACGAGACGATCG-CACGTGCTCACGCTCAGTTCGGTAA 320
| || ||| ||| | ||||| || ||||| || | ||| |||| ||| |||| |||||
Sbjct 191 GTCC-TTTCTCGCCGGAGGAGGATGAGACTATTGTAACG-GCTCGTGCTAAGTTTGGTAA 248
Query 321 TAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGACAACGCCGTGAAGAATCA 380
||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 249 CAAATGGGCGACGATTGCTCGTCTTCTCAACGGTCGTACGGATAACGCCGTTAAAAATCA 308
Query 381 CTGGAACTCGACGCTCAAGAGGAAATGCGGCGG 413
||||||||||||||| |||||||||||| ||||
Sbjct 309 CTGGAACTCGACGCTTAAGAGGAAATGCAGCGG 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74618789955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5