BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67310.1 Length=1638 Score E Sequences producing significant alignments: (Bits) Value Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1 730 0.0 > Ahg496869 jgi|Araly1|496869|fgenesh2_kg.8__2685__AT5G67310.1 Length=1417 Score = 730 bits (395), Expect = 0.0 Identities = 491/537 (91%), Gaps = 7/537 (1%) Strand=Plus/Plus Query 1010 GGAAGTTTTAAGGAAACTCAAAACGGAACTAAACGAGGTTT-CGAAAGAAGGGCGTGTGT 1068 ||||| ||||| |||||| ||||||||| ||||| | |||| || |||||||||| ||| Sbjct 882 GGAAGGTTTAATGAAACTGAAAACGGAAGTAAACAACGTTTCCG-TAGAAGGGCGTCTGT 940 Query 1069 TTGAGGAATCAGATACTGGCAAGTGTCCCTATCTCAAC-AATGTGATCTCTGAGACTCTT 1127 | |||||||||||||| ||||||||||| ||||| ||| |||||||||||||| || || Sbjct 941 TGGAGGAATCAGATACCGGCAAGTGTCCGTATCT-AACAAATGTGATCTCTGAAACACTC 999 Query 1128 CGTTTGTTTCCGGCGGCGCCCTTACTTGTCCCACACGCTTCATCCACTGACTGTGAAGTC 1187 ||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1000 CGTTTGTATCCGGCAGCGCCGTTACTTGTCCCACACGCTTCATCCGCTGACTGTGAAGTC 1059 Query 1188 GCTGGATTTGACATTCCACGTCGCACCTGGCTATTTATCAATGCGTGGGCTATTCAGAGA 1247 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| Sbjct 1060 GCTGGATTTGACATTCCACGTGGCACCTGGTTATTTATCAATGCGTGGGCTATTCAAAGA 1119 Query 1248 GACCCAAATGTAT-GG--GATGACCCAGAAACTTTCAAACCAGAGAGGTTTGAATCAGAG 1304 ||||| || |||| || |||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1120 GACCCGAAGGTATGGGATGATGACCCGGAAGCTTTCAAACCAGAGAGGTTTGAATCAGAG 1179 Query 1305 ACCCATCGTGGTAAGTTTCTGCCTTTCGGAATCGGTAGGAGAGCATGTCCTGGTATGGGC 1364 || ||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||| Sbjct 1180 ACTCATCGTGGTAAGTATCTGCCTTTTGGAATCGGCAGAAGAGCATGTCCTGGTATGGGC 1239 Query 1365 CTGGCCCAACTAGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTCGATTGGGAG 1424 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1240 CTGGCCCAACTTGTACTGAGCTTAGCTTTAGGCTCATTGATCCAGTGTTTTGATTGGGAG 1299 Query 1425 AGAGACAATGACGTTGCCGTTGACATGTCGGAAGGAAAGGGTCTTACCATGCCCAAATCT 1484 |||||||||||||| || ||||||||||||||||||| |||| |||||||||||||| || Sbjct 1300 AGAGACAATGACGTGGCAGTTGACATGTCGGAAGGAAGGGGTATTACCATGCCCAAAGCT 1359 Query 1485 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTCGACAAACTTGTTCTTTAA 1541 |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 1360 GTGCCTTTAGTTGCCAAATGCAAGTCTTTACCAATCCTGGACAAAGTTGTTCTTTAA 1416 Score = 682 bits (369), Expect = 0.0 Identities = 534/611 (87%), Gaps = 22/611 (4%) Strand=Plus/Plus Query 63 ATTGATTTGTTTCTACTCGCTCTCATGGCCGGATTCATTGCAGTGGCGTATGTTTTCCGA 122 |||||||||| ||| ||||||||||| |||||||| || | ||||| ||| |||||||| Sbjct 1 ATTGATTTGTCTCTCCTCGCTCTCATCGCCGGATTTATCACGGTGGCTTATCTTTTCCGA 60 Query 123 TCAAAGCAGAAGAAGAATTTACCGCCAA-ATCCTG-TAGGTTTTCCGGTGATCGGACACC 180 ||||||||||||||||| | | || | ||| | | ||| || | ||||||| Sbjct 61 TCAAAGCAGAAGAAGAA--GA-AG--AATTTACTGCCAAG---TCCAGT-A--GGACACC 109 Query 181 TCCACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCGGCA 240 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 110 TACACCTTCTCAAAGAACCTGTTCACCGTTCCCTTCGTGACCTCTCTCGAAACCTCCGCA 169 Query 241 TCGACGTGTTTATTCTCCGGCTAGGCTCTCGTCGAGCGGTGGTTGTAACGTCAGCTTCAG 300 |||||||||| |||| || ||||| || ||||||||||| ||||| ||||||||||| | Sbjct 170 GCGACGTGTTTTTTCTACGCCTAGGTTCACGTCGAGCGGTTGTTGTGACGTCAGCTTCCG 229 Query 301 CTGCGGAGGAGTTCTTATCTCA-GCAAAACGATGTTGTTTTCGCCAACAGGCCTCTCGCT 359 |||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||| Sbjct 230 CTGCGGAGGAGTTCTTATCTCATG-AAAACGATGTCATCTTCGCCAACAGGCCTCTCGCT 288 Query 360 ACTTTAACTGAATACATGGGTTACAACAACACGCTGGTTAGCACAGCTCCGTACGGGGAG 419 | ||||||||||||||||||||||||| |||| | |||||| |||||| |||||| || Sbjct 289 AGTTTAACTGAATACATGGGTTACAACTGCACGATCGTTAGCGCAGCTCTGTACGGCGAA 348 Query 420 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGATATCTTGTCCACCGCTCGTCTCAGA 479 ||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| Sbjct 349 CATTGGCGCAGACTCCGCCGTTTCTGCGCCGTAGAGATCTTCTCCGCCGCTTGTCTCAGA 408 Query 480 GACTTTTCGGATATACGGAGAGACGAAGTGAGAGCTATGATTCGGAAGATCAACGTGGAA 539 |||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct 409 GACTCTTCGGATATACGGAGAGACGAAGTGAGAGCTCTGCTTCGGAAGATCTACGTGGAA 468 Query 540 CTGGTAACATCAGGAGGCA--G--T--GTCAGATTGAAACTCCAGCCGTTTCTTTATGGG 593 ||||||||||||||||| | | | ||||||||||||||||||||||| |||||||| Sbjct 469 CTGGTAACATCAGGAGGAAATGACTTTGTCAGATTGAAACTCCAGCCGTTGCTTTATGGA 528 Query 594 CTTACGTATAACATCCTAATGAGCATGGTCGCTGGAAAACGAGAGGAAGACGAGGAAACT 653 ||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 529 CTTACGTTTAACATCCTTATGAGCATAGTCGCCGGAAAACGAGAGGAAGACGAGGAAACG 588 Query 654 AAGGAAGTTCG 664 |||||| |||| Sbjct 589 AAGGAA-TTCG 598 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61401474940 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5