BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67330.1 Length=1951 Score E Sequences producing significant alignments: (Bits) Value Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1 2567 0.0 > Ahg496866 jgi|Araly1|496866|fgenesh2_kg.8__2682__AT5G67330.1 Length=1793 Score = 2567 bits (1390), Expect = 0.0 Identities = 1659/1783 (93%), Gaps = 41/1783 (2%) Strand=Plus/Plus Query 79 GGCGGTTACCGGGAAATATGTCGGAGACTGATAGAGAGCGTCCGTTATTAGCATCGGAGG 138 |||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||| Sbjct 46 GGCGGTTACCGGAAAACATGTCGGAGACCGATAGAGAGCGTCCGTTATTAGAATCGGAGG 105 Query 139 AGAGAGCTTATGAAGAAACCGAGAAAGTTCTCATAGTCGGAATCGACGAAGAAGAAGACG 198 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 AGAGGGCTTATGAAGAAACCGAGAAAGTTCTCATAGTCGGAATCGACGAAGAAGAAGACG 165 Query 199 CTGATTACGACGATGACCCCGGAAACTCTCCTAAATTCTCATGGAAGAAGCTTTGGCTAT 258 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 CTGATTACGACGACGACCCCGGAAACTCTCCTAAATTCTCATGGAAGAAGCTTTGGCTAT 225 Query 259 TCACTGGACCTGGTTTTCTGATGAGTATCGCTTTCCTCGATCCAGGTAATCTCGAGAGCG 318 |||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 226 TCACCGGACCTGGGTTTCTGATGAGTATCGCTTTCATCGATCCAGGTAATCTCGAGGGCG 285 Query 319 ATCTTCAAGCTGGAGCCATCGCTGGTTACTCTTTGATTTGGCTATTGATGTGGGCTACGG 378 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 286 ATCTTCAAGCTGGAGCCATCGCTGGCTACTCTTTGATTTGGCTCTTGATGTGGGCTACTG 345 Query 379 CGATTGGGCTTCTGATTCAACTTCTATCTGCCCGTCTCGGTGTGGCGACGGGTAGACATC 438 ||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||| | |||| Sbjct 346 CGATTGGCCTTTTGATCCAACTTCTCTCTGCTCGTCTCGGTGTCGCGACTGGTCGGCATC 405 Query 439 TGGCGGAGTTGTGTCGAGAAGAGTATCCGACTTGGGCAAGGATGGTGCTTTGGATTATGG 498 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TGGCGGAGTTGTGTCGTGAAGAGTATCCGACTTGGGCAAGGATGGTGCTTTGGATTATGG 465 Query 499 CGGAGATTGCTTTGATCGGAGCTGATATTCAGGAAGTTATTGGTAGTGCTATAGCTATCA 558 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 466 CGGAGATTGCTTTGATCGGAGCTGATATTCAAGAAGTTATTGGTAGTGCTATAGCTATCA 525 Query 559 AGATCTTGTCTAATGGATTGGTTCCTCTTTGGGCTGGTGTTGTTATCACTGCTCTTGATT 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 AGATCTTGTCTAATGGATTGGTTCCTCTTTGGGCTGGTGTTGTTATCACTGCTCTTGATT 585 Query 619 GTTTCATCTTTCTATTTTTGGAGAATTATGGAATAAGGAAACTAGAAGCTGTGTTTGCTA 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 GTTTCATCTTTCTATTTTTGGAGAATTATGGAATAAGGAAACTAGAAGCTGTGTTTGCTA 645 Query 679 TTTTGATTGCAACAATGGCTCTTGCATTTGCTTGGATGTTTGGTCAGACGAAACCCAGTG 738 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 646 TTTTGATTGCAACAATGGCTCTTGCATTTGCTTGGATGTTTGGTCAGACTAAACCCAGTG 705 Query 739 GAACTGAGCTCCTTGTTGGAGCATTGGTCCCTAAGCTTAGCTCCAGGACTATCAAACAAG 798 |||| || ||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct 706 GAACCGAACTCCTTGTTGGAGCATTGGTCCCTAAGCTCAGTTCGAGGACTATCAAACAAG 765 Query 799 CTGTTGGTATTGTGGGATGTATTATCATGCCTCACAATGTGTTCTTGCATTCAGCACTTG 858 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 CTGTTGGTGTTGTGGGATGTATTATCATGCCTCACAATGTGTTCTTGCATTCAGCACTTG 825 Query 859 TGCAATCCAGAGAAGTCGATCCGAAAAAGAGATTCCGGGTCAAAGAAGCTCTCAAGTACT 918 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 826 TGCAATCCAGAGAAGTCGATCCTAAAAAGAGATTCCGGGTCAAAGAAGCTCTCAAGTACT 885 Query 919 ACTCCATTGAATCCACTGGTGCTCTTGCGGTTTCTTTCATTATCAACGTCTTTGTGACCA 978 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 886 ACTCCATTGAATCTACTGGTGCTCTTGCGGTTTCCTTCATTATCAACGTCTTTGTGACCA 945 Query 979 CGGTGTTTGCCAAGTCGTTTTACGGGACAGAGATAGCGGACACCATCGGTCTTGCAAATG 1038 |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 946 CGGTTTTTGCCAAGTCGTTTTACGGAACAGAGATAGCGGATACCATCGGTCTTGCAAATG 1005 Query 1039 CTGGACAGTACTTACAGGACAAATACGGGGGTGGGTTTTTCCCGATACTGTATATATGGG 1098 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1006 CTGGACAGTACTTACAGGACAAATACGGTGGCGGGTTTTTCCCGATACTGTATATATGGG 1065 Query 1099 CGATTGGAGTCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACGTACGCCGGACAGT 1158 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1066 CGATTGGAGTCTTAGCTGCTGGTCAGAGTAGTACCATCACAGGTACTTACGCTGGACAGT 1125 Query 1159 TTATAATGGGAGGGTTCTTGAATCTCAAGATGAAGAAATGGGTTAGAGCCTTGATCACAA 1218 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1126 TTATAATGGGAGGGTTCTTGAATCTCAAGATGAAGAAATGGGTTAGAGCCTTAATCACAA 1185 Query 1219 GAAGCTGTGCAATCATACCAACAATGATCGTGGCGCTTGTCTTTGATTCATCGGATTCTA 1278 ||||||| |||||||| ||||||||||| || |||||| ||||||||||||||||||||| Sbjct 1186 GAAGCTGCGCAATCATCCCAACAATGATTGTTGCGCTTTTCTTTGATTCATCGGATTCTA 1245 Query 1279 TGCTTGATGAGCTCAACGAATGGCTAAACGTTCTTCAATCGGTTCAGATCCCTTTCGCTG 1338 |||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| | Sbjct 1246 TGCTCGACGAGCTCAACGAATGGCTAAATGTTCTTCAATCAGTTCAGATCCCTTTCGCCG 1305 Query 1339 TGATCCCACTCCTTTGCTTGGTCTCCAATGAGCAAATCATGGGCAGTTTCAAAATTCAAC 1398 | ||||| || || ||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1306 TCATCCCTCTGCTCTGCTTGGTCTCCAATGACCAAATCATGGGCAGTTTCAAAATACAAC 1365 Query 1399 CTTTAGTCCAAACAATCTCATGGATAGTAGCTGCTCTTGTGATAGCCATTAATGGGTATC 1458 | |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 1366 CATTAGTCCAGACAATCTCATGGATTGTAGCTGCCCTTGTGATAGCCATTAATGGGTATC 1425 Query 1459 TAATGGTGGATTTCTTCTCAGGAGCTGCAACGAATTTGATTTTGCTTGTGCCAGTGATCA 1518 |||||||||| |||||||||||||| || ||||| || ||||||| ||||||||||||| Sbjct 1426 TAATGGTGGACTTCTTCTCAGGAGCAGCGACGAACGTGGTTTTGCTCGTGCCAGTGATCA 1485 Query 1519 TATTCGCAATTGCTTATGTTGTGTTTGTACTTTACCTTATCTCACGAGG-ACTCACGTAC 1577 ||||||||||||| |||||| ||||||| ||||||||||| |||||||| | |||||||| Sbjct 1486 TATTCGCAATTGCGTATGTTTTGTTTGTGCTTTACCTTATATCACGAGGCA-TCACGTAC 1544 Query 1578 ACTCCTTGGCAACTAGTGGCTTCTTCACATAAAGAACCACAGAGGGATGATGAGTGAGTA 1637 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1545 ACTCCCTGGCAACTAGTGGCTTC---ACATAAAGAACCACAGAGGGATGATGAGTAAGTG 1601 Query 1638 AAGGAAAAGCAAAGAGACCTTTTCATTGAAGAATAAGAATAAGAGAGATTGCTCTTTTTA 1697 ||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1602 AAGGAAAAGCAAAGAGACCTTTTCATTGAAGAATAAGAATAAGAGAGAT-G--------A 1652 Query 1698 GTGAAACAAACAATAGAAAGTTGAGTTTCAGTATGGTAACAAAACAATGTCCTGATGTAT 1757 || ||||||||||||||||| |||||||||||||||||| | | || | || Sbjct 1653 ---AA-CAAACAATAGAAAGTTGGGTTTCAGTATGGTAACAA-----T-T--TG-T--AT 1697 Query 1758 TTGTATTATAGTGTTTTATGGTTTTTAGAGTATAGCTTTGGAAGAATCCGAA-T----CG 1812 | |||||||||||||||||| ||| ||||| |||||||||||| ||| | || Sbjct 1698 ----A--ATAGTGTTTTATGGTTTT-AGAATATAGTTTTGGAAGAATCTGAACTGTTTCG 1750 Query 1813 TATCGTTTGTGTAAAACTTCCGGCGTTTCTTAGAATTTTGGCA 1855 |||| ||||||||| |||||||||||||||| ||||||||||| Sbjct 1751 TATCATTTGTGTAAGACTTCCGGCGTTTCTTTGAATTTTGGCA 1793 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73323721625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5