BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67360.1
Length=2689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496864 jgi|Araly1|496864|fgenesh2_kg.8__2680__AT5G67360.1 3879 0.0
Ahg896093 jgi|Araly1|896093|Al_scaffold_0005_59 544 2e-153
> Ahg496864 jgi|Araly1|496864|fgenesh2_kg.8__2680__AT5G67360.1
Length=2639
Score = 3879 bits (2100), Expect = 0.0
Identities = 2479/2656 (93%), Gaps = 49/2656 (2%)
Strand=Plus/Plus
Query 1 AATGATTCCTTCGTACGCATCCTCA------tcttcttcttcttc-tc-tct-tctACTG 51
||||||| |||||||||||||||| |||||||||||||| || ||| ||||||
Sbjct 1 AATGATTTTTTCGTACGCATCCTCATCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTACTA 60
Query 52 TATTTAAACACTCTCTCGTCTTCTCCTTGGATCCAGAGAGAGACACAACACACCATCTCA 111
||||||||| | ||||| |||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 61 TATTTAAACTCCCTCTCATCTTCTCCTTCGATTCAGAGAGAGACACAACACACAATCTCA 120
Query 112 ATCATGTCTTCTTCGTTTCTCTCCTCCACTGCTTTCTTCCTCCTCCTTTGTCTAGGATTC 171
||||||||||||||||||||||||| | | | |||| | |||||||||||||||
Sbjct 121 ATCATGTCTTCTTCGTTTCTCTCCT----T-C---C-TCCT--T-CTTTGTCTAGGATTC 168
Query 172 TGCCACGTGTCCTCTTCCTCCTCCGACCAAGGAACTTACATCGTTCACATGGCTAAATCT 231
|||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 169 TGCCACGTGTCCTCCTCCTCCTCCCAACATGGAACTTACATCGTTCACATGGCTAAATCT 228
Query 232 CAGATGCCGTCGTCTTTCGACCTCCACTCTAACTGGTACGATTCATCTCTCAGATCTATC 291
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 229 CAGATGCCGTCGACCTTCGACCTCCACTCTAACTGGTACGATTCGTCTCTCAGATCTGTC 288
Query 292 TCCGACTCAGCCGAATTGCTCTACACTTACGAGAACGCGATTCATGGATTCTCAACACGG 351
|||||||| || |||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 289 TCCGACTCTGCTGAATTGCTATACACTTACGAGAACGCGATTCATGGATTCTCCACTCGG 348
Query 352 CTAACTCAAGAAGAAGCCGACTCGCTCATGACTCAACCTGGTGTTATCTCCGTTTTACCG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CTAACTCAAGAAGAAGCCGACTCGCTCATGACTCAACCTGGTGTTATCTCCGTTTTACCG 408
Query 412 GAGCACCGTTACGAGCTACACACCACTCGTACTCCTCTCTTCCTCGGTCTCGACGAACAC 471
||||||||||||||||| ||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 409 GAGCACCGTTACGAGCTTCACACGACTCGGACTCCTCTCTTCCTCGGTCTTGATGAACAC 468
Query 472 ACCGCAGATCTGTTCCCTGAAGCCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTCGAT 531
||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 469 ACCGCAGATCTATTCCCCGAAACCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTTGAT 528
Query 532 ACCGGAGTTTGGCCCGAGAGTAAAAGCTACTCCGACGAAGGATTCGGTCCTATTCCTTCC 591
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 529 ACCGGAGTTTGGCCCGAGAGTAAAAGCTACTCCGACGAAGGATTCGGTCCGATTCCTTCG 588
Query 592 TCCTGGAAAGGCGGATGCGAGGCCGGAACCAATTTCACCGCTTCTCTCTGTAACCGTAAA 651
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 589 ACCTGGAAAGGAGGATGCGAGGCCGGAACTAATTTCACGGCTTCTCTCTGTAACCGTAAA 648
Query 652 CTAATCGGAGCAAGATTCTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTAATCGGAGCAAGATTCTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAA 708
Query 712 TCTAAAGAATCAAGATCTCCTAGAGACGACGACGGTCACGGAACTCACACCTCATCGACC 771
|||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct 709 TCTAAAGAATCAAGATCTCCTAGAGACGACGATGGCCACGGAACTCACACGTCATCAACC 768
Query 772 GCCGCTGGATCCGTCGTTGAAGGAGCTAGCTTATTAGGCTACGCTTCAGGAACAGCTCGT 831
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 769 GCCGCTGGATCCGTCGTCGAAGGAGCTAGCTTATTAGGTTACGCTTCAGGAACAGCTCGT 828
Query 832 GGTATGGCTCCACGCGCTCGTGTCGCTGTTTACAAAGTCTGTTGGCTCGGTGGTTGTTTC 891
|| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 829 GGGATGGCTCCACGCGCTCGTGTCGCTGTATACAAAGTTTGTTGGGTCGGTGGTTGTTTC 888
Query 892 AGCTCAGATATTTTAGCTGCAATCGATAAAGCCATCGCCGATAACGTCAATGTCCTGTCG 951
|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 889 AGCTCAGATATTTTAGCTGCGATCGATAAAGCCATCGCCGATAACGTCAACGTTTTGTCG 948
Query 952 ATGTCACTCGGCGGTGGAATGTCGGATTATTATAGAGACGGTGTTGCGATCGGAGCATTC 1011
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 949 ATGTCACTCGGCGGTGGAATGTCGGATTATTATAGAGACGGTGTTGCAATCGGAGCTTTC 1008
Query 1012 GCCGCCATGGAAAGAGGGATTTTAGTATCTTGCTCAGCTGGTAATGCTGGTCCGAGTAGT 1071
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1009 GCCGCCATGGAAAGAGGGATTTTAGTTTCTTGCTCAGCTGGTAATGCTGGTCCGAGTAGT 1068
Query 1072 TCTAGTTTATCAAACGTAGCTCCATGGATCACAACTGTTGGTGCTGGTACTTTAGATCGT 1131
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1069 TATAGTTTATCAAACGTAGCTCCATGGATTACAACTGTTGGTGCTGGTACTTTAGATCGT 1128
Query 1132 GATTTTCCGGCGCTTGCGATTCTCGGTAACGGCAAGAATTTCACCGGAGTTTCTTTGTTT 1191
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1129 GATTTTCCGGCGCTTGCGATTCTCGGTAGCGGGAAGAATTTCACCGGAGTTTCTTTGTTT 1188
Query 1192 AAAGGAGAAGCTTTACCGGATAAATTGTTGCCGTTTATTTACGCTGGGAATGCTAGTAAT 1251
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1189 AAAGGAGAAGCTTTACCGGATAAATTGTTGCCGTTTATTTACGCCGGGAATGCTAGTAAT 1248
Query 1252 GCTACTAATGGTAATCTCTGTATGACCGGAACTTTGATCCCGGAGAAAGTAAAGGGGAAG 1311
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1249 GCTACTAATGGTAATCTCTGTATGACCGGAACTTTAATCCCGGAGAAAGTAAAGGGGAAG 1308
Query 1312 ATTGTGATGTGTGATAGAGGAATTAATGCTAGAGTTCAGAAAGGTGATGTGGTTAAAGCA 1371
|||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1309 ATTGTGATGTGTGACAGAGGAGTCAATGCTAGAGTTCAGAAAGGAGATGTGGTTAAAGCA 1368
Query 1372 GCAGGTGGAGTTGGAATGATTCTGGCTAACACTGCGGCGAATGGTGAAGAGCTTGTTGCG 1431
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1369 GCTGGTGGAGTTGGAATGATTCTTGCTAACACGGCGGCGAATGGTGAAGAGCTTGTTGCG 1428
Query 1432 GATGCTCATTTGTTACCGGCGACCACCGTTGGTGAAAAAGCCGGTGATATAATCCGGCAT 1491
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1429 GATGCTCATTTGTTACCGGCGACCACCGTTGGTGAAAAAGCGGGGGATATAATCCGGCAT 1488
Query 1492 TACGTGACTACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGGAACAGTCGTCGGT 1551
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1489 TACGTAACAACTGATCCTAATCCAACCGCTTCGATTTCAATCTTAGGAACCGTCGTTGGT 1548
Query 1552 GTTAAACCATCTCCGGTTGTCGCAGCGTTTAGCTCACGTGGACCGAATTCGATTACACCG 1611
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||
Sbjct 1549 GTTAAACCATCTCCGGTGGTTGCAGCGTTTAGCTCACGAGGACCGAATTCGATTACGCCG 1608
Query 1612 AATATTCTTAAACCGGATCTGATCGCTCCTGGAGTAAACATCCTCGCCGCGTGGACCGGT 1671
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
Sbjct 1609 AATATTCTTAAACCGGATTTGATCGCTCCTGGAGTCAACATCCTCGCCGCTTGGACCACT 1668
Query 1672 GCTGCTGGACCAACCGGACTCGCTTCCGATTCTCGCCGCGTGGAGTTCAATATCATCTCT 1731
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1669 GCTGCAGGACCAACCGGGCTCGCTTCCGATTCTCGCCGCGTGGAGTTCAATATAATCTCC 1728
Query 1732 GGGACGTCGATGTCTTGCCCTCACGTTAGTGGTTTAGCGGCGCTTCTCAAGTCGGTGCAT 1791
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1729 GGAACGTCGATGTCTTGCCCTCACGTGAGCGGTTTAGCGGCGCTTCTCAAGTCGGTGCAT 1788
Query 1792 CCTGAATGGAGCCCGGCGGCGATTAGATCGGCGCTTATGACCACCGCTTACAAAACCTAC 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 CCTGAATGGAGCCCGGCGGCGATTAGATCGGCGCTTATGACCACCGCTTACAAAACCTAC 1848
Query 1852 AAAGACGGTAAACCGTTACTCGACATCGCGACAGGGAAGCCTTCGACGCCGTTCGATCAC 1911
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1849 AAAGACGGTAAACCATTACTCGACATCGCGACGGGGAAGCCTTCGACGCCGTTCGATCAC 1908
Query 1912 GGTGCAGGACACGTGTCACCAACAACTGCCACTAATCCAGGACTCATCTACGATCTAACG 1971
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1909 GGAGCAGGACACGTGTCACCAACAACCGCCACTAATCCAGGACTCATCTACGATCTAACG 1968
Query 1972 ACGGAGGATTACTTAGGCTTCCTCTGCGCATTGAATTACACATCGCCGCAAATTCGAA-G 2030
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| | || |
Sbjct 1969 ACGGAGGATTACTTAGGCTTCCTCTGCGCATTGAACTACACGTCGTCGCAAAT-CAAAAG 2027
Query 2031 TGTCTCGAGACGTAATTACACTTGCGATCCGAGTAAATCGTACTCGGTCGCTGATTTGAA 2090
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2028 TGTCTCGAGACGTAATTACACTTGTGATCCGAGTAAATCGTACTCCGTCGCTGATTTGAA 2087
Query 2091 CTACCCGTCGTTCGCCGTTAACGTTGATGGAGTCGGTGCGTATAAGTACACGCGCACGGT 2150
||||| |||||||| ||||||||||| || | ||| |||||||| ||||||||||| ||
Sbjct 2088 TTACCCTTCGTTCGCTGTTAACGTTGACGGTGCCGGCGCGTATAAATACACGCGCACTGT 2147
Query 2151 GACGAGCGTGGGAGGAGCTGGGACTTACTCGGTTAAAGTAACTTCGGAGACGACAGGAGT 2210
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2148 AACGAGCGTGGGAGGAGCTGGGACTTATTCGGTTAAAGTAACTTCGGAGACAACAGGAGT 2207
Query 2211 CAAGATTTCGGTTGAACCGGCGGTTTTGAATTTCAAGGAAGCTAACGAGAAAAAATCGTA 2270
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2208 CAAAATTTCGGTTGAACCGGCGGTTTTGAATTTCAAAGAAGCTAACGAGAAAAAATCGTA 2267
Query 2271 TACGGTGACGTTTACTGTAGACTCGTCGAAGCCGTCTGGATCTAACAGCTTTGGGAGTAT 2330
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2268 TACGGTGACGTTTACTGTAGACTCGTCAAAGCCGTCTGGATCTAACAGCTTTGGGAGTAT 2327
Query 2331 TGAATGGTCGGATGGGAAACACGTGGTGGGAAGTCCCGTGGCGATTAGCTGGACATAGTC 2390
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2328 TGAATGGTCGGATGGGAAACACGTGGTGGGAAGTCCCGTGGCAATTAGCTGGACATAGCC 2387
Query 2391 GTAAATTATGAGAAA-TGAAAGGGGTTTTATGGAAAAGAAAAGGTGTTTACAGATTTATT 2449
||||||||||||||| ||||||||||| ||||||| ||||| ||||| ||||| |||||
Sbjct 2388 GTAAATTATGAGAAAATGAAAGGGGTTGAATGGAAA-GAAAACGTGTTCACAGAGTTATT 2446
Query 2450 GTAATGCCGTTTTTAGATACGAAGAAACCTCTGTTTAGCAAAAACGACATGCAGTCTGTT 2509
||||||||||||||||||| |||||| | ||||||||||||||||| |||||||||||||
Sbjct 2447 GTAATGCCGTTTTTAGATAAGAAGAAGC-TCTGTTTAGCAAAAACGGCATGCAGTCTGTT 2505
Query 2510 AAGACTTGCCTAGTTTGTTTTTGGGATGTCT--TG-CT-G-T-TTTT--A-------A-T 2553
||| ||||||||||||||||||||||||||| || || | | |||| | | |
Sbjct 2506 AAGGCTTGCCTAGTTTGTTTTTGGGATGTCTAATGTCTTGCTGTTTTTTATCTTTCTAAT 2565
Query 2554 TTTAAAAAGAAATATATTCTCCGGCTACA-A-CA---GTAGCTGGGTCTCTCTAGGTGTT 2608
||||||||||||||||||| ||||| ||| | || ||||||||||| | |||||||||
Sbjct 2566 TTTAAAAAGAAATATATTCCCCGGCCACACAACAATAGTAGCTGGGTC-C-CTAGGTGTT 2623
Query 2609 TTATCATGTGACTTGA 2624
||||||||||||||||
Sbjct 2624 TTATCATGTGACTTGA 2639
> Ahg896093 jgi|Araly1|896093|Al_scaffold_0005_59
Length=552
Score = 544 bits (294), Expect = 2e-153
Identities = 331/349 (95%), Gaps = 1/349 (0%)
Strand=Plus/Plus
Query 429 ACACACCACTCGTACTCCTCTCTTCCTCGGTCTCGACGAACACACCGCAGATCTGTTCCC 488
|||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 1 ACACACGACTCGGACTCCTCTCTTCCT-GGTCTTGATGAACACACCGCAGATCTGTTCCC 59
Query 489 TGAAGCCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTCGATACCGGAGTTTGGCCCGA 548
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TGAAACCGGCTCTTACAGCGACGTCGTCGTCGGAGTTCTTGATACCGGAGTTTGGCCCGA 119
Query 549 GAGTAAAAGCTACTCCGACGAAGGATTCGGTCCTATTCCTTCCTCCTGGAAAGGCGGATG 608
||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct 120 GAGTAAAAGCTACTCCGACGAAGGATTCGGTCCGATTCCTTCGACTTGGAAAGGCGGATG 179
Query 609 CGAGGCCGGAACCAATTTCACCGCTTCTCTCTGTAACCGTAAACTAATCGGAGCAAGATT 668
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGAGGCCGGAACTAATTTCACCGCTTCTCTCTGTAACCGTAAACTAATCGGAGCAAGATT 239
Query 669 CTTCGCTCGTGGTTACGAATCAACGATGGGACCAATCGATGAATCTAAAGAATCAAGATC 728
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 240 CTTCGCTCGTGGTTACGAATCAACGATGGGACCAATAGACGAATCTAAAGAATCAAGATC 299
Query 729 TCCTAGAGACGACGACGGTCACGGAACTCACACCTCATCGACCGCCGCT 777
|||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 300 TCCTAGAGACGACGACGGTCACAGAACTCACACGTCATCAACCGCCGCT 348
Score = 202 bits (109), Expect = 1e-50
Identities = 125/133 (94%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1479 TATAATCCGGCATTACGTGACTACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGG 1538
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 354 TATAATCTGGCATTACGTAACAACTGATCCTAATCCCACCGCTTCGATTTCAATCTTAGG 413
Query 1539 AACAGTCGTCGGTGTTAAACCATCTCCGGTTGTCGCAGCGTTTAGCTCACGTGGACCGAA 1598
||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 414 AACCGTCGTTGGTGTTAAACCATCTCCGGTGGTTGCAGCGTTTAGCTCACGAGGACCGAA 473
Query 1599 TTCGATTACACCG 1611
|||||||||||||
Sbjct 474 TTCGATTACACCG 486
Score = 97.1 bits (52), Expect = 6e-19
Identities = 62/67 (93%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1658 CCGCGTGGACCGGTGCTGCTGGACCAACCGGACTCGCTTCCGATTCTCGCCGCGTGGAGT 1717
|||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 484 CCGCTTGGACCACTGCTGCAGGACCAACCGGGCTCGCTTCCGATTCTCGCCGCGTGGAGT 543
Query 1718 TCAATAT 1724
|||||||
Sbjct 544 TCAATAT 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101434322435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5