BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67370.1
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496863 jgi|Araly1|496863|fgenesh2_kg.8__2679__AT5G67370.1 1714 0.0
> Ahg496863 jgi|Araly1|496863|fgenesh2_kg.8__2679__AT5G67370.1
Length=1143
Score = 1714 bits (928), Expect = 0.0
Identities = 1064/1130 (94%), Gaps = 8/1130 (1%)
Strand=Plus/Plus
Query 1 GTGTATCAGGTGCTCTGCTCCACTTACCTTTAATCTTCAATCAACGGTACTCTCAGGAAC 60
|||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||||
Sbjct 1 GTGTATCAGGTGCTCTGCTCCACTGACCTTTAATCTTTATTCAACAATACTCTCAGGAAC 60
Query 61 AGGAATCAGATCGAGCAATGCTCAGGTTAATCGTTAATTACCCTCTGATTCCCAAGATAT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 61 AGGAATCAGATCGAGCAATGCTCAGGTTAATCGTTAGTTACCCTCTGATTCCCAAGAAAC 120
Query 121 CCCACCGGGTTTGTAGTAACAGTAGTAGTAAGCTCGGGAGTTACTATGATTCTTCGTCGA 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCACCGGGTTTGTAGTAAC---AGTAGTAAGCTCGGGAGTTACTATGATTCTTCGTCGA 177
Query 181 TCATAAAATATGGCGGAATCAGCGATGTTGTTGGTAAGAAGCAGGAGCTTTTTC-TAAGT 239
|||| ||||||||||||||| |||||| |||||||||||||||||||||| ||| ||| |
Sbjct 178 TCATCAAATATGGCGGAATCGGCGATGATGTTGGTAAGAAGCAGGAGCTTCTTCTTAA-T 236
Query 240 GTTTCGGTGAAAGCAGTGGAAGACAAAGGTAACAATGGAGGTGGAAGCATGAGTTTCTCG 299
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 237 GTTTCGGTGAAAGCTGTGGAAGACAAAGGTAATAATGGAGGTGGAAGCATGAGTTTCCCT 296
Query 300 GGTCAAAGCTGGGATCCTAGTTCCGAGATTGAAGTTCCTTCAGACCAAAGACCCGTGAAT 359
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTCAAAGCTGGGATCCAAGTTCAGAGATTGAAGTTCCTTCAGACCAAAGACCCGTGAAT 356
Query 360 GAGTATTCGTCTCTAAAGGAAGGAATGTTGTATTCATGGGGAGAATTGGGTCCAAGCGAA 419
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAGTATTCGTCTTTGAAGGAAGGAATGTTGTATTCATGGGGAGAATTGGGTCCAAGCGAG 416
Query 420 TTCTTTATTCGTCTAGGTGGTCTTTGGTTGGTCACTTTCACTGTTCTTGGAGTTCCTGTT 479
|||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 417 TTCTTTATCCGTCTCGGTGGTCTTTGGTTGGTTACTTTCACTGTTCTTGGTGTTCCTATT 476
Query 480 GCAGCTGCTAGCTTTAATCCTTCCAGAGAGCCTTTGAGATTTATTCTAGCTGCAGGGACT 539
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 477 GCAGCTGCTAGCTTTAATCCTTCCAGAGAGCCTTTGAGATTTGTTCTAGCTGCAGGGACA 536
Query 540 GGAACTTTATTTCTCGTTTCTTTGATTGTCTTGAGAATTTATCTGGGGTGGAGCTATGTT 599
||||| ||||| || ||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 537 GGAACGTTATTCCTGGTTTCATTGATTGTCTTGAGGATTTACCTGGGATGGAGCTATGTT 596
Query 600 GGAGATAGACTACTTTCTGCAGTTATACCTTACGAAGAGAGTGGATGGTATGATGGACAA 659
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 597 GGAGATAGACTACTTTCTGCAGTTATACCATATGAAGAGAGTGGATGGTATGATGGACAA 656
Query 660 ATGTGGGTCAAACCACCTGAGGTGTTGGCTCGCGACAGGTTGTTGGGTTCTTACAAGGTG 719
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 657 ATGTGGGTGAAACCACCAGAGGTGTTGGCTCGCGACAGGTTGTTAGGTTCTTACAAGGTG 716
Query 720 AAGCCAGTGATCAAGATGCTCAAACAAACATTAATCGGAACAGGAGCTTTACTCGTTTCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAGCCAGTGATCAAGATGCTCAAACAAACATTAATCGGAACAGGAGCTTTACTCGTTTCA 776
Query 780 GCATTCGTGCTATTCGTTTTCGCAACACCAGTCGAGGATTTCTTTAAAACCACTCTAGGA 839
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 777 GCATTTGTGCTATTCGTTTTCGCAACACCAGTTGAGGATTTCTTTAAAACCACTCTAAGA 836
Query 840 TCTACAGAAAACCAACCAGAAGTTTCCATTTCAAGAACCAGCAACAAGTTCAATATAAGA 899
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TCTAAAGAACACCAACCCGAAGTTTCCATTTCAAGAACCAGCAACAAGTTCAATATAAGA 896
Query 900 AAAGAACAATTGCTTCGACTACCCGTAGATGTTGTGACTGACGATGATCTGGCAGCAGCC 959
||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 AAAGAACAACTGCTTCGGTTACCTGTAGATGTTGTGACTGACGATGATCTGGCAGCAGCC 956
Query 960 GCGGCTGAGGCTGCGGATGGAAGACCTGTCTATTGCAGAGACCGGTACTACCGTGCATTA 1019
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 GCAGCTGAGGCTGCTGATGGAAGACCTGTCTATTGCAGAGACCGTTACTACCGTGCATTA 1016
Query 1020 GCAGGTGGTCAATACTGCAAATGGGAAGATCTTGTTAAATAGTTGTCAC-ACTAATAGAA 1078
||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 1017 GCAGGTGGTCAATACTGCAAATGGGAAGATCTTGTCAAATAGTTGTCACTA-TAATAGAA 1075
Query 1079 TACCAACAC-ACATACTACAGTATGTAATTTTTGCTTAAAATGGCTTTAA 1127
|||||| || ||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1076 TACCAAGACCACACACTACAATATGTAATTTTTGATTAAAATGGCTTTAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43841354550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5