BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67380.1 Length=1467 Score E Sequences producing significant alignments: (Bits) Value Ahg496862 jgi|Araly1|496862|fgenesh2_kg.8__2678__AT5G67380.2 1434 0.0 Ahg923952 jgi|Araly1|923952|scaffold_105233.1 152 7e-36 > Ahg496862 jgi|Araly1|496862|fgenesh2_kg.8__2678__AT5G67380.2 Length=1250 Score = 1434 bits (776), Expect = 0.0 Identities = 892/945 (94%), Gaps = 19/945 (2%) Strand=Plus/Plus Query 488 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTATGCGGTGGGCCAAATATTGTCAA 547 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 324 GAAGATAAGAAGAGAGATTAAAATACTTCAGAACCTTTGCGGTGGGCCAAATATTGTCAA 383 Query 548 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATATTTGAATATGT 607 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 384 GCTGCTTGATGTTGTTAGAGATCAACATTCGAAAACTCCAAGCTTGATTTTTGAATATGT 443 Query 608 TAACAGCACAGACTTTAAAGTTTTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 667 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 444 TAACAGCACAGACTTTAAAGTTCTGTATCCTACGTTGACTGATTACGACATTCGTTACTA 503 Query 668 CATCTATGAGCTGTTGAAGGCACTAGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 727 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 504 TATCTATGAGCTTTTGAAGGCACTGGACTTCTGCCATTCACAAGGAATAATGCACAGAGA 563 Query 728 CGTCAAGCCTCATAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 787 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 CGTCAAGCCTCACAATGTTATGATTGACCATGAGCTGCGTAAGCTTCGTCTTATAGATTG 623 Query 788 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCCTCAAGATA 847 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 624 GGGTCTTGCTGAGTTTTACCACCCTGGAAAAGAGTATAATGTCCGTGTTGCTTCTAGATA 683 Query 848 -TTTCAAGGGACCTGAACTTCTTGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 906 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 684 CTTT-AAGGGACCTGAACTTCTCGTGGACTTGCAAGACTATGACTATTCATTGGATATGT 742 Query 907 GGAGTCTTGGCTGTATGTTTGCAGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 966 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 743 GGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAACCTTTCTTCTACGGCC 802 Query 967 ATGACAACCAGGATCAGCTAGTGAAAATCGCCAAGGTGCTTGGGACTGACGAATTGAATG 1026 ||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 803 ATGACAATCAGGATCAGCTAGTGAAAATTGCCAAGGTGATTGGGACTGACGAATTGAATG 862 Query 1027 CTTATCTGAACAAGTACCAGTTAGAACTTGATCCACAACTGGAAGCACTTGTTGGGCGGC 1086 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 863 CTTATCTGAACAAGTACCAGTTAGAACTTGACCCACAACTCGAAGCACTTGTTGGGCGGC 922 Query 1087 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCACTTAGTTTCACCCG 1146 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||| | Sbjct 923 ATAGCAGGAAACCTTGGTCCAAATTCATCAACGCAGACAATCAGCATTTGGTGTCACCAG 982 Query 1147 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGACAGATTAACTGCAA 1206 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 983 AGGCGATTGATTTCCTCGACAAGCTACTTCGGTATGATCATCAAGATAGATTAACTGCAA 1042 Query 1207 AAGAAGCCATGGCGCACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1266 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1043 AAGAAGCCATGGCACACGCTTACTTCGCCCAAGTTAGGGCAGCAGAAACCAGCAGAATGA 1102 Query 1267 GAAGTCAATGAAACACAGAGATCTCTCTGTCTATAAACTTACTGATGATGATGATGGTAA 1326 |||||||||||| ||||||||||| ||| | | || ||| ||| |||||||||||||| Sbjct 1103 GAAGTCAATGAA-CACAGAGATCTGTCT-T-TG-AA-CTTTCTGGTGATGATGATGGTAT 1157 Query 1327 TGTTCATCTTTTCTTCAAAGTAttttttttAAATCAAGGTGATGTTTCTTCTGTCCAACT 1386 |||||||||||||||||| ||||| || | | ||||| |||||||||||||||||||| Sbjct 1158 TGTTCATCTTTTCTTCAA-GTATTCTTAT-A--TCAAGATGATGTTTCTTCTGTCCAAC- 1212 Query 1387 TATTAAACAATTTGTCCTGAATTCGAATGTCTGAAACGTCTTATA 1431 | || |||||||||| ||| |||||||||||| ||||||| Sbjct 1213 -A--AA----TTTGTCCTGACTTCAAATGTCTGAAACCTCTTATA 1250 Score = 438 bits (237), Expect = 5e-122 Identities = 291/316 (92%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 78 ctcttcttcgattctcctcttcgacgtctcttGTTACTGTGCGCCGTCTTAGCCTTACGT 137 ||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| Sbjct 19 CTCTTCTTCGAATCTCCTCTTCGACGTCTC----T--TGTGCGCCGTCTTAACCTTACGT 72 Query 138 GCGCCAACGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAGAGCT 197 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 73 GCGCCGTTGGCGCACTCTCCTATCCTACGCTCATCTATCGTCACTCCCACAGCGAAAGCT 132 Query 198 GTCTCGGAAGTTTCCGGTTGTACTACGATCGATCCAGATT-TTCTCGTAGAGATCTCTGA 256 ||||| || ||||||||| |||| |||||||||||||||| || |||| ||||||||||| Sbjct 133 GTCTCCGACGTTTCCGGTAGTACCACGATCGATCCAGATTCTT-TCGTCGAGATCTCTGA 191 Query 257 TTCTAACCAGACGCGGGCGATGTCGAAAGCTCGTGTGTACACCGAAGTCAATGTGATTCG 316 ||||||||||||||| |||||||||||||||||||| |||||||| || || |||||||| Sbjct 192 TTCTAACCAGACGCGAGCGATGTCGAAAGCTCGTGTTTACACCGACGTTAACGTGATTCG 251 Query 317 ACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 376 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 ACCTAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGGGGAGCAAGATGATTA 311 Query 377 TGAGGTAGTAAGGAAG 392 |||||||||||||||| Sbjct 312 TGAGGTAGTAAGGAAG 327 > Ahg923952 jgi|Araly1|923952|scaffold_105233.1 Length=328 Score = 152 bits (82), Expect = 7e-36 Identities = 111/123 (90%), Gaps = 10/123 (8%) Strand=Plus/Plus Query 761 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 GCTGCGTAAGCTTCGTCTTATAGATTGGGGTCTTGCTGAGTTTTACCACCCTGGAAAAGA 247 Query 821 GTATAATGTCCGTGTTGCCTCAAGATATTTCAAGGGACCTGAACTTCTTGTGGACTTGCA 880 |||||||||||||||||| | | |||||||||||||||||| | ||||||||| Sbjct 248 GTATAATGTCCGTGTTGC-T-----T----CAAGGGACCTGAACTTCTCGCGGACTTGCA 297 Query 881 AGA 883 ||| Sbjct 298 AGA 300 Score = 104 bits (56), Expect = 2e-21 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 303 GTCAATGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 361 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 GTCAACGTGATTCGACCCAAGGATTATTGGGATTACGAGTCACTCATTGTTCAATGGGG 188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54888043045 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5