BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G67385.1 Length=2026 Score E Sequences producing significant alignments: (Bits) Value Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1 3219 0.0 Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844 364 1e-99 > Ahg496860 jgi|Araly1|496860|fgenesh2_kg.8__2676__AT5G67385.1 Length=2022 Score = 3219 bits (1743), Expect = 0.0 Identities = 1932/2025 (95%), Gaps = 6/2025 (0%) Strand=Plus/Plus Query 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGGCACGTCTTCTTCATGAGAAGGACTTGAAATAGTGTTCCATGGTGAATTTCTTGAGTG 60 Query 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCC 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAAGAAACTGCGAGCTAAGTGTTCGTAATATGTCAGCAAAGAAGAAAGATCTTTTGTCT 120 Query 121 TCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAAGTATCTAGTGATGTCACC 180 ||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 121 TCAGCCATGAAGAGAACCAGTGAATGGATCTCTTCTCAAGAAGTCTCTAGTGATGTTACC 180 Query 181 GTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCCACTCATGTCAAAATGTGGG 240 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 181 GTTCATGTAGGAGAAGCTTCTTTTTCACTGCACAAGTTTCCACTCTTGTCAAAATGTGGG 240 Query 241 TTTATCAAGAAACTTGTGTCGGAATCAAGCAAAGATTCAGATTCCACTGTTATCAAGATA 300 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| Sbjct 241 TTTATCAAGAAACTTGTGTCGGAATCAAACAAAGATTCAGATTCCACCGTTATCAATATA 300 Query 301 CCAGATATTCCAGGAGGCTCTGAAGCATTTGAGCTAGCGGCTAAGTTCTGCTACGGCATT 360 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| Sbjct 301 ACAGATATCCCAGGAGGCTCTGAAGCATTCGAGCTAGCTGCTAAGTTCTGCTACGGAATT 360 Query 361 AACTTTGATATGAGCACAGAGAACATTGCCATGTTGCGATGTGCAGCGGAGTATCTAGAG 420 |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 361 AACTTTGATATGAGTACAGAGAACATTGCCATGCTGCGATGTGCAGCAGAGTATCTAGAG 420 Query 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAAGCTTACTTGAATGAA 480 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 421 ATGACAGAGGAACACTCTGTGGAAAATCTCGTTGTAAGAGCCGAATCTTACTTGGATGAA 480 Query 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACAGTCTTGCACAAATCAGAG-AAGTTGTT 539 |||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| Sbjct 481 GTAGCTCTCAAGAGCTTATCGAGTTCGATCACTGTCTTGCACAAATCAGAGGAA-TTGTT 539 Query 540 GCCCATTGCTGAAAGAGTCAAACTTGTAAGCCGTTGCATCGATGCAATTGCTTATATGAC 599 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 540 GCCCATTGCTGAAAGAGTAAAACTTGTGAGCCGTTGCATCGATGCAATTGCTTATATGAC 599 Query 600 TTGTCAAGAGAGCCATTTTTGCAGTCCTTCTTCAAGTAATAGCGGTAACAATGAGGTTGT 659 |||||| |||||||| |||||||||||||| || |||||||| ||||||||||||||||| Sbjct 600 TTGTCAGGAGAGCCAATTTTGCAGTCCTTCCTCTAGTAATAGTGGTAACAATGAGGTTGT 659 Query 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTTGTTGATTGGTGGGCTGAAGACTTAACGGTTCT 719 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 660 GGTTCAGCAGCAGAGCAAGCAGCCTGTGGTTGATTGGTGGGCTGAAGACTTAACGGTCCT 719 Query 720 TAGGATTGATTCGTTTCAACGTGTCCTGATCGCGATGATGGCTAGAGGGTTTAAGCAGTA 779 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 720 TAGGATTGATTTGTTTCAACGTGTCCTGATCGCGATGATGGCTAGGGGGTTTAAGCAGTA 779 Query 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TGGACTTGGTCCAGTGCTTATGCTCTATGCTCAGAAATCTCTTCGAGGGTTGGAAATTTT 839 Query 840 CGGGAAAGGAATGAAGAAGATTGAGCCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 840 CGGGAAAGGTATGAAGAAGATTGAACCAAAACAAGAACACGAGAAAAGAGTGATTCTTGA 899 Query 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AACAATCGTAAGCCTTCTTCCTCGAGAGAAAAATGCAATGTCGGTTAGCTTTCTCTCTAT 959 Query 960 GCTTCTACGCGCAGCAATATTCCTCGAAACAACGGTTGCTTGTAGACTTGACTTGGAAAA 1019 ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 960 GCTTCTACGTGCAGCAATATTCCTTGAAACAACGGTTGCTTGTAGACTTGACTTGGAGAA 1019 Query 1020 CAGAATGGGATTACAATTAGGACAAGCCGTGCTCGATGATCTCTTGATTCCTTCTTATTC 1079 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1020 GAGAATGGGATTACAATTAGGACAAGCCGTGCTCGACGATCTCTTGATTCCTTCTTATTC 1079 Query 1080 ATTCACTGGAGATCACTCCATGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1080 ATTCACTGGAGATCACTCTTTGTTTGATACTGACACTGTTCAACGCATTCTCATGAATTA 1139 Query 1140 TCTCGAGTTTGAAGTCGAAGGAGTTCGCTTAAGCAATAATGGTGTTGATCTTGCTGGTGA 1199 ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1140 TCTTGAGTTTGAAGTTGAAGGAGTTCGCTTAAGCAATAACGGTGTTGATCTTGCTGGTGA 1199 Query 1200 TATGGAACGTGTTGGTAAACTTTTGGAGAATTATATGGCTGAAATTGCTTCTGATAGAAA 1259 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1200 TATGGAACGTGTTGGTAAACTGTTGGAGAATTATATGGCTGAAATTGCATCTGATAGAAA 1259 Query 1260 TGTGAGCTTGCAGAAATTCATCGGTTTAGCTGAACTTATCCCCGAACAGTCTAGGGTTAC 1319 |||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| Sbjct 1260 TGTGAGCTTGCAGAAATTCATCAGTTTAGCTGAACTTATTCCTGAACAGTCTAGGGTTAC 1319 Query 1320 TGAAGATGGTATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCCAATATGAGTGA 1379 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 1320 TGAAGATGGGATGTATCGAGCCGTCGACATCTACCTTAAGGCGCATCCAAATATGACTGA 1379 Query 1380 TGTAGAGAGGAAGAAAGTGTGCAGCTTAATGGACTGCCAAAAACTATCACGAGAAGCCTG 1439 | | |||||||||||||| |||||||||||||| ||||||||||||||||||||||| || Sbjct 1380 TATTGAGAGGAAGAAAGTATGCAGCTTAATGGATTGCCAAAAACTATCACGAGAAGCTTG 1439 Query 1440 CGCTCATGCAGCTCAGAATGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 CGCTCATGCAGCTCAGAACGATCGTCTTCCTGTTCAGACCATTGTTCAAGTCCTTTACTA 1499 Query 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 CGAGCAACAACGTCTACGAGGAGAAGTCACTAACGATTCAGATTCTCCAGCCCCACCACC 1559 Query 1560 ACCACAACCAGCAGCTGTTCTTCCTCCCAAACTTAGCTCCTACACCGACGAACTCTCCAA 1619 ||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1560 ACCTCCACCAGCAGCTGTTCTTCCTCCCAAACTCAGCTCCTACACTGACGAACTCTCCAA 1619 Query 1620 GCTTAAACGCGAAAATCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTAAA 1679 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1620 GCTGAAACGCGAAAACCAGGACTTGAAGCTCGAACTTCTCAAAATGAAAATGAAGCTTAA 1679 Query 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAAACATCATCATCAACCATCAGCACGAATCCAAG 1739 |||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||| Sbjct 1680 AGAGTTTGAGAAAGAGAGTGAGAAGAAATCGTCATCACCAACCATCAGCACCAATCCAAG 1739 Query 1740 TTCACCAATCTCAACTGCTTCCACGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1740 TTCACCAATCTCAACTGCTTCCATGGGTAAGCCTCCATTGCCAAGAAAGTCATTCATAAA 1799 Query 1800 CTCTGTTTCCAAGAAACTCGGTAAGCTAAACCCTTTTAGCATCACACCATACAACGGTAG 1859 ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 1800 CTCTGTTTCAAAGAAACTCGGAAAGCTAAACCCTTTTGGCATCACACCATACAACGGTAG 1859 Query 1860 AGGCAGAACCAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAATACCATATCTATA 1919 ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | || Sbjct 1860 AGGCAGAACGAAACCACCAAAAGATCGGAGACACTCTATTTCTTGAAAACCATATTT-TA 1918 Query 1920 TACACATATA--TAAAGTTGAATTTTTGTTGGAACTTTTAAGTTCTGATTCAAGGGGTTT 1977 ||||||||| || ||| |||||||| |||||||||||||||||||||||||| ||| Sbjct 1919 CACACATATAAGTAT-GTTTAATTTTTGCTGGAACTTTTAAGTTCTGATTCAAGGATTTT 1977 Query 1978 TCTTCCTGCTTATCAACATTTGATATTTTGGTGTGTTTATGATGT 2022 | || || ||||||||||||||||||||| ||||||||||||||| Sbjct 1978 TTTTTCTACTTATCAACATTTGATATTTTTGTGTGTTTATGATGT 2022 > Ahg897878 jgi|Araly1|897878|Al_scaffold_0005_1844 Length=1656 Score = 364 bits (197), Expect = 1e-99 Identities = 422/527 (80%), Gaps = 30/527 (6%) Strand=Plus/Plus Query 103 AAGAAAGATCTTTTGTCCTCAGCTATGAAAAGAACCAGTGAATGGATTTCTTCTCAAGAA 162 ||||| || ||| |||||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 10 AAGAAGGAGCTTCTGTCCTCAGCTATGGAGAGAACTAGTGAATGGATTTCTTCTCAAGAA 69 Query 163 GTAT-CTAGTGATGTCACCGTTCATGTAGGAGAAGCTTCGTTTTCACTGCACAAGTTTCC 221 | | ||||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||| Sbjct 70 AT-TCCTAGTGACGTCACTGTTCATGTTGGAGAAACTTCGTTTTCACTCCACAAGTTTCC 128 Query 222 ACTCATGTCAAAATGTGGGTTTATCAAGAAACTTG-TGTCGGAATCAAGCAAAGATTC-- 278 ||| | ||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 129 ACTTGTTTCAAAATGTGGGTTTATAAAGAAACTTGCT-TCCAAATCAAGCAACGATTCGA 187 Query 279 AGATTCCACTGTTATCAAGATACC-AGATATTCCAGGAGGCT-CTGAAGCATTTGAGCTA 336 | ||| || |||||||| || || |||| |||| ||||| | | || |||||||||||| Sbjct 188 ACATT--ACCGTTATCAAAAT-CCAAGATTTTCCCGGAGG-TGCAGAGGCATTTGAGCTA 243 Query 337 GCGGCT-AAGTTCTGCTACGGCATTAA-CTTTGATATGAGCACAGAGAACATTGCCATGT 394 || | ||||||||||||| || ||| ||| || || | ||||||||||||||| ||| Sbjct 244 GC-AATCAAGTTCTGCTACGACA-TAAGCTTCGAGATAAACACAGAGAACATTGCGATGC 301 Query 395 TGCGATGTGCAGCGGAGTATCTAGAGATGACAGAGGAACACTCTGTGGAAAATCTCGTTG 454 | || |||||||| |||||||||||||||||||||||||||||||| ||||| || || | Sbjct 302 TACGTTGTGCAGCAGAGTATCTAGAGATGACAGAGGAACACTCTGTTGAAAACCTAGTGG 361 Query 455 TA-AGAGCCGAAGCTTACTTGAATGAAGTAGCTC-TCAAGAGCTTATCGAGTTCGATCAC 512 | | | || | |||| | || ||||| | || ||||||| ||||||| ||| | | Sbjct 362 -AGACAATAGAGGTTTACCTAAACGAAGTGG-TCCTCAAGAGTTTATCGAAATCGGTTAA 419 Query 513 AGT-CTTGC-ACAAATCAGA-GAAGTTGTTGCCCATTGCTGAAAGAGTCAAACTTGTA-A 568 ||| || || | ||||| | || |||||||| || || || ||||| | ||| || | Sbjct 420 AGTTCT-GCGA-AAATCTCAAGAT-TTGTTGCCTATAGCCGAGAGAGTGAGACTCGTGGA 476 Query 569 GCCGTTGCATCGATGCAATTGCTTATATGACTT-GTCAAGAGAGCCA 614 ||| || |||||| ||||||||||| || || |||| |||||||| Sbjct 477 -CCGGTGTATCGATTCAATTGCTTATG-GAGTTTGTCAGGAGAGCCA 521 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76180490000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5