BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G67390.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358820 jgi|Araly1|358820|fgenesh1_pg.C_scaffold_8002607 865 0.0
> Ahg358820 jgi|Araly1|358820|fgenesh1_pg.C_scaffold_8002607
Length=525
Score = 865 bits (468), Expect = 0.0
Identities = 511/531 (96%), Gaps = 6/531 (1%)
Strand=Plus/Plus
Query 241 ATGGAGAAGCTTCTTAATCCGTACGATAAGCAGTGCATGAAAATGGCTATGCTTAAACAT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGCTACTTAATCCGTACGATAAGCAGTGCATGAAAATGGCTATGCTTAAACAT 60
Query 301 GAAGAAACTTTCAAGCAACAGGTATATGAACTTCATAGATTATATCAAGTTCAGAAGATA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAAACTTTCAAGCAACAGGTATATGAACTTCATAGATTATATCAAGTTCAGAAGATA 120
Query 361 TTGATGAAGAACATGGAGATCAACAAATTTACTACCAAGAACAATCATGTAAATTCAGGT 420
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 TTGATGAAGAACATGGAGATTAACAAATTTACTACCAAGAATAATCATGTAAACTCAGGT 180
Query 421 CTAGGAACATTCATCAGAAGAGTTGACAACGAGATTGACCGGCCGGCGAATTTCTCCGGT 480
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 181 CTAGGAACATTCATCAGAAGAGTTGACCATGAGATTGACCGGCCGGCGAATTTCTCCGGT 240
Query 481 GGTAATAATAATATAGAGATTATGGATGAGAGTGAGATCGAGTTAACCCTTGGTCCCTCG 540
|||||||||| || |||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 241 GGTAATAATA-TA--GAGATTATGGATGAGAGTGAGATCGAGTTAACTCTAGGTCCGTCG 297
Query 541 TGTTACGGTGGTGATGAAATGATGAGGATGAACAAGAAGAAGAAAAAGAACTCTTTGCCG 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGTTACGGTGGTGATGAATTGATGAGGATGAACAAGAAGAAGAAAAAGAACTCTTTGCCG 357
Query 601 GAGATGATGGACGGGAGTTTAAATTCCGGTCGCCGGAGTTTTTCTTCGTCTTCGACAGGA 660
|||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GAGATGATGGACGGAAATTTAAATTCCGGTCGCCGGAGTTTCTCTTCGTCTTCGACAGGA 417
Query 661 TCAAGTAATAACAATAACAACAATCTTGAAGAACAAGTGAGGCAAGAAAGAATGATGAAA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCAAGTAATAACAATAACAACAATCTTGAAGAACAAGTGAGGCAAGAAAGAATGATGAAG 477
Query 721 CATCAGAAGCAGCAGCCATGGCTTCAAGCATTGACCTTGAATGTTATTTGA 771
||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 478 CATCAGAAGCAGC--C-ATGGCTTCAAGCATTGACCTTGAATGTTATTTGA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5