BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00300.1 Length=189 Score E Sequences producing significant alignments: (Bits) Value Ahg925532 jgi|Araly1|925532|scaffold_201093.1 339 5e-93 Ahg907883 jgi|Araly1|907883|Al_scaffold_0002_964 339 5e-93 Ahg908261 jgi|Araly1|908261|Al_scaffold_0002_1342 279 3e-75 > Ahg925532 jgi|Araly1|925532|scaffold_201093.1 Length=229 Score = 339 bits (183), Expect = 5e-93 Identities = 187/189 (99%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 21 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 80 Query 61 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTT 140 Query 121 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 200 Query 181 ATCTCTTGA 189 ||||||||| Sbjct 201 ATCTCTTGA 209 > Ahg907883 jgi|Araly1|907883|Al_scaffold_0002_964 Length=231 Score = 339 bits (183), Expect = 5e-93 Identities = 187/189 (99%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 43 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 102 Query 61 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTT 162 Query 121 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT 222 Query 181 ATCTCTTGA 189 ||||||||| Sbjct 223 ATCTCTTGA 231 > Ahg908261 jgi|Araly1|908261|Al_scaffold_0002_1342 Length=213 Score = 279 bits (151), Expect = 3e-75 Identities = 167/174 (96%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 1 ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG 60 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 43 ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTA-TG 101 Query 61 -ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGT 119 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 102 CATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGA--AACAAAAATGTTGT 159 Query 120 ATTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA 173 |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 TTTTTCTTGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAA 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6339251326 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5