BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= ATCG00420.1

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925539 jgi|Araly1|925539|scaffold_201100.1                        870    0.0   
  Ahg907877 jgi|Araly1|907877|Al_scaffold_0002_958                     586    5e-167


> Ahg925539 jgi|Araly1|925539|scaffold_201100.1
Length=519

 Score =  870 bits (471),  Expect = 0.0
 Identities = 475/477 (99%), Gaps = 0/477 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  80

Query  61   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  140

Query  121  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  200

Query  181  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  201  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  260

Query  241  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT  300
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  261  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACATGAGTAATCCTAGAATTCCATCCGTT  320

Query  301  TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  321  TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC  380

Query  361  ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAGGGTGG  420
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  381  ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAGGGTGG  440

Query  421  CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA  477
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  441  CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA  497


> Ahg907877 jgi|Araly1|907877|Al_scaffold_0002_958
Length=438

 Score =  586 bits (317),  Expect = 5e-167
 Identities = 317/317 (100%), Gaps = 0/317 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  60

Query  61   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  120

Query  121  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  180

Query  181  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  240

Query  241  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT  300

Query  301  TTCTGGGTTTGGAAAAG  317
            |||||||||||||||||
Sbjct  301  TTCTGGGTTTGGAAAAG  317


 Score =  220 bits (119),  Expect = 6e-57
 Identities = 121/122 (99%), Gaps = 0/122 (0%)
 Strand=Plus/Plus

Query  356  GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAG  415
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  317  GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAG  376

Query  416  GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  377  GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT  436

Query  476  GA  477
            ||
Sbjct  437  GA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17284481817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5