BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00420.1 Length=477 Score E Sequences producing significant alignments: (Bits) Value Ahg925539 jgi|Araly1|925539|scaffold_201100.1 870 0.0 Ahg907877 jgi|Araly1|907877|Al_scaffold_0002_958 586 5e-167 > Ahg925539 jgi|Araly1|925539|scaffold_201100.1 Length=519 Score = 870 bits (471), Expect = 0.0 Identities = 475/477 (99%), Gaps = 0/477 (0%) Strand=Plus/Plus Query 1 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 80 Query 61 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 140 Query 121 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 200 Query 181 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 260 Query 241 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT 300 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 261 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACATGAGTAATCCTAGAATTCCATCCGTT 320 Query 301 TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATC 380 Query 361 ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAGGGTGG 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 381 ACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAGGGTGG 440 Query 421 CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA 497 > Ahg907877 jgi|Araly1|907877|Al_scaffold_0002_958 Length=438 Score = 586 bits (317), Expect = 5e-167 Identities = 317/317 (100%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 1 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC 60 Query 61 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT 120 Query 121 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA 180 Query 181 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA 240 Query 241 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT 300 Query 301 TTCTGGGTTTGGAAAAG 317 ||||||||||||||||| Sbjct 301 TTCTGGGTTTGGAAAAG 317 Score = 220 bits (119), Expect = 6e-57 Identities = 121/122 (99%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 356 GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAG 415 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 317 GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAG 376 Query 416 GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT 436 Query 476 GA 477 || Sbjct 437 GA 438 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17284481817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5