BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= ATCG00440.1
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg925541 jgi|Araly1|925541|scaffold_201102.1 660 0.0
Ahg925507 jgi|Araly1|925507|scaffold_201068.1 660 0.0
Ahg925471 jgi|Araly1|925471|scaffold_201032.1 660 0.0
> Ahg925541 jgi|Araly1|925541|scaffold_201102.1
Length=405
Score = 660 bits (357), Expect = 0.0
Identities = 361/363 (99%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 81
Query 61 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 141
Query 121 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 201
Query 181 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 261
Query 241 CCGTGGGCAATGAGTTTCGATGTACTGGGGGTATCTGCTTTTATAGAAGCTTTCATTTTC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 262 CCGTGGGCAATGAGTTTCGATGTACTGGGGGCATCTGCTTTTATAGAAGCTTTCATTTTC 321
Query 301 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 322 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAGTGGTCT 381
Query 361 TAG 363
|||
Sbjct 382 TAG 384
> Ahg925507 jgi|Araly1|925507|scaffold_201068.1
Length=405
Score = 660 bits (357), Expect = 0.0
Identities = 361/363 (99%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 81
Query 61 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 141
Query 121 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 201
Query 181 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 261
Query 241 CCGTGGGCAATGAGTTTCGATGTACTGGGGGTATCTGCTTTTATAGAAGCTTTCATTTTC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 262 CCGTGGGCAATGAGTTTCGATGTACTGGGGGCATCTGCTTTTATAGAAGCTTTCATTTTC 321
Query 301 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 322 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAGTGGTCT 381
Query 361 TAG 363
|||
Sbjct 382 TAG 384
> Ahg925471 jgi|Araly1|925471|scaffold_201032.1
Length=873
Score = 660 bits (357), Expect = 0.0
Identities = 361/363 (99%), Gaps = 0/363 (0%)
Strand=Plus/Plus
Query 1 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTACTAATATCAAGTGCTATT 549
Query 61 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CCTGTTTTGGCATTTCTAATTTCCGGAGTTTTATCTCCAATTAGGAAGGGGCCGGAGAAA 609
Query 121 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CTTTCTAGTTATGAATCAGGTATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATC 669
Query 181 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACTGTTTTTCTGTAT 729
Query 241 CCGTGGGCAATGAGTTTCGATGTACTGGGGGTATCTGCTTTTATAGAAGCTTTCATTTTC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 730 CCGTGGGCAATGAGTTTCGATGTACTGGGGGCATCTGCTTTTATAGAAGCTTTCATTTTC 789
Query 301 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAATGGTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 790 GTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCATTGGAGTGGTCT 849
Query 361 TAG 363
|||
Sbjct 850 TAG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12934744671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5