BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00470.1 Length=399 Score E Sequences producing significant alignments: (Bits) Value Ahg475565 jgi|Araly1|475565|fgenesh2_kg.2__695__ATCG00470.1 719 0.0 Ahg925505 jgi|Araly1|925505|scaffold_201066.1 614 2e-175 Ahg475600 jgi|Araly1|475600|fgenesh2_kg.2__730__ATCG00470.1 403 4e-112 > Ahg475565 jgi|Araly1|475565|fgenesh2_kg.2__695__ATCG00470.1 Length=398 Score = 719 bits (389), Expect = 0.0 Identities = 395/398 (99%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 1 ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA 60 Query 61 GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACGCGCCGATT 120 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 61 GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACGCGCCGATT 120 Query 121 GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGTTAACGATG 180 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGTTAACGATG 180 Query 181 GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT 240 Query 241 GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA 300 Query 301 GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA 360 Query 361 CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398 |||||||||||||||||||||||||||||||||||||| Sbjct 361 CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398 > Ahg925505 jgi|Araly1|925505|scaffold_201066.1 Length=1867 Score = 614 bits (332), Expect = 2e-175 Identities = 342/347 (99%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 53 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACG 112 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1501 AAGTAAAAGAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACG 1560 Query 113 CGCCGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGT 172 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1561 CGCTGATTGCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGT 1620 Query 173 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAG 232 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1621 TAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATAACTATTTTAG 1680 Query 233 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 TAAATGATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAA 1740 Query 293 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1741 TAGCAGAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAG 1800 Query 353 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 399 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1801 CTCTCAGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTGA 1847 > Ahg475600 jgi|Araly1|475600|fgenesh2_kg.2__730__ATCG00470.1 Length=221 Score = 403 bits (218), Expect = 4e-112 Identities = 220/221 (99%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 178 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAAT 60 Query 238 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GATGCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCA 120 Query 298 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAAGCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTC 180 Query 358 AGACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 398 | ||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAACGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG 221 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14308345875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5