BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00640.1 Length=201 Score E Sequences producing significant alignments: (Bits) Value Ahg925457 jgi|Araly1|925457|scaffold_201018.1 361 1e-99 Ahg925551 jgi|Araly1|925551|scaffold_201112.1 350 3e-96 Ahg937101 jgi|Araly1|937101|scaffold_501292.1 134 3e-31 > Ahg925457 jgi|Araly1|925457|scaffold_201018.1 Length=243 Score = 361 bits (195), Expect = 1e-99 Identities = 199/201 (99%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 82 Query 61 AATGATATTAAGAAAGAAGCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 120 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 83 AATGATATTAAGAAAGAATCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 142 Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 202 Query 181 CACGGGGAAATCAAGAAATAG 201 ||| ||||||||||||||||| Sbjct 203 CACTGGGAAATCAAGAAATAG 223 > Ahg925551 jgi|Araly1|925551|scaffold_201112.1 Length=243 Score = 350 bits (189), Expect = 3e-96 Identities = 197/201 (98%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1 ATGGCCAAGGGTAAAGATGTTCGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCGA 60 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 23 ATGGCCAAGGGTAAAGATGTTCGAGTAAGAATTATTTTGGAATGTACTAGTTGTGTTCGA 82 Query 61 AATGATATTAAGAAAGAAGCCGCGGGAATTTCCAGATATATTACTCAAAAGAATCGGCAT 120 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 83 AATGATATTAAGAAAGAATCCGCGGGAATTTCCAGATATATTACTCAAAAAAATCGGCAT 142 Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 202 Query 181 CACGGGGAAATCAAGAAATAG 201 ||||||||||||||||||||| Sbjct 203 CACGGGGAAATCAAGAAATAG 223 > Ahg937101 jgi|Araly1|937101|scaffold_501292.1 Length=305 Score = 134 bits (72), Expect = 3e-31 Identities = 78/81 (96%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 121 AACACCCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCTATTGTTATAAACATACAATT 180 ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| Sbjct 114 AACACCCCTAGTCGATTGGAATTGAAAAAATTCTGTCCATATTGTTGTAAACATACAATT 173 Query 181 CACGGGGAAATCAAGAAATAG 201 ||||||||||||||||||||| Sbjct 174 CACGGGGAAATCAAGAAATAG 194 Score = 115 bits (62), Expect = 1e-25 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 1 ATGGCCAAGGGTAAAGATGTT-CGAGTAACAATTATTTTGGAATGTACCAGTTGTGTTCG 59 |||||||| |||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct 21 ATGGCCAA-GGTAAAGATGTTAAGAGTAACAATTATTTTGGAATGTACCAGTAGTTTTCG 79 Query 60 AAATGATATTAAGAAAGAAGCCGCGGGAAT 89 |||| |||||||||||| | | |||||||| Sbjct 80 AAATTATATTAAGAAAGCATCGGCGGGAAT 109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 6797510458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5