BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= ATCG00660.1 Length=354 Score E Sequences producing significant alignments: (Bits) Value Ahg925553 jgi|Araly1|925553|scaffold_201114.1 638 0.0 Ahg925455 jgi|Araly1|925455|scaffold_201016.1 638 0.0 > Ahg925553 jgi|Araly1|925553|scaffold_201114.1 Length=397 Score = 638 bits (345), Expect = 0.0 Identities = 351/354 (99%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 1 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 82 Query 61 GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 83 GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA 142 Query 121 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 202 Query 181 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 203 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA 262 Query 241 TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 322 Query 301 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA 376 > Ahg925455 jgi|Araly1|925455|scaffold_201016.1 Length=455 Score = 638 bits (345), Expect = 0.0 Identities = 351/354 (99%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 1 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23 ATGACTAGAATTAAACGCGGATATATAGCTCGGAGGCGTAGAACAAAACTTCGTTTATTT 82 Query 61 GCATCAAGCTTTCGAGGGGCTCATTCACGGCTTACACGAACTATGACTCAACAGAGAATA 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 83 GCATCAAGCTTTCGAGGGGCTCATTCACGACTTACACGAACTATGACTCAACAGAGAATA 142 Query 121 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143 AGAGCTTTAGTTTCGGCTCATCGGGATAGGGGTAAAAGAAAAAGAGATTTTCGCCGTTTA 202 Query 181 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATGAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 203 TGGATCACTCGAATAAATGCCGTAATTCACGAAATGGGGGTATTCTATAGTTATAATCAA 262 Query 241 TTCATACACAATCTATACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 TTCATACACAATCTGTACAAGAAGCAATTACTTCTTAATCGGAAAATACTTGCACAAATA 322 Query 301 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATaaaaaaaTAA 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GCTCTATTAAATAGGAGTTGTCTTTATACAATTTCGAATGACATAAAAAAATAA 376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12591344370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5